Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi14g0350 | ATGAAGTGTACAAAGAAAGGAAGGCGTCAAAATTTTCAAGCTTATTGTGAATATTCATTGCTTCCATCTGGCCTTTTTTTTTATTTGGGTGTCTTTATGATAGGCCATTTGGTGTATAATTCTTATTTCTTGAAGGTGCAACAACCGTTCGCTCTTCTGGTCTGTGTGGGTGGGGCTTCATCTCCGATGGCGTCTGGCGGAGGCAACGCAGGGGTAGAGTGGCACGTGCGGCCTCCTAACCCTAAGAACCCCATCGTTTTCTTCGATATCACCATCGGTAACATCCCGGCTGGTAGAATCAAGATGGAGCTCTTCGCCGATATTGCCCCCAAAACCGCCGAGAATTTCAGGCAGTTCTGCACAGGCGAGTACAGGAAAGCTGGACTCCCTGTTGGTTACAAAGGTTGTCAATTTCATAGGGTGATTAAGGATTTTATGATTCAGGCTGGTGATTTTGTGAAGGGTGATGGTAGTGGATGTGTTTCCATCTATGGACACAAGTTTGATGATGAAAATTTTATTGCCAAACACACTGGCCCTGGTCTTTTATCTATGGCAAATAGTGGACAGAATACCAATGGTTGTCAGTTTTTTATAACTTGCGCAAAATGTGACTGGCTTGACAACAAGCACGTTGTTTTTGGGAGGGTTCTTGGAGATGGTCTTTTGGTTGTCAGGAAGATTGAGAATGTGGCAACTGGACCCAATAACCGGCCTAAATTAGCTTGTGTCATTGCTGAGTGTGGAGAAATGTAA | 756 | 0.4444 | MKCTKKGRRQNFQAYCEYSLLPSGLFFYLGVFMIGHLVYNSYFLKVQQPFALLVCVGGASSPMASGGGNAGVEWHVRPPNPKNPIVFFDITIGNIPAGRIKMELFADIAPKTAENFRQFCTGEYRKAGLPVGYKGCQFHRVIKDFMIQAGDFVKGDGSGCVSIYGHKFDDENFIAKHTGPGLLSMANSGQNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM | 251 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi14g0350 | 251 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 87 | 250 | IPR002130 | GO:0000413|GO:0003755 | |
| Glsi14g0350 | 251 | CDD | cyclophilin_ABH_like | 84 | 249 | - | - | |
| Glsi14g0350 | 251 | Gene3D | - | 73 | 251 | IPR029000 | - | |
| Glsi14g0350 | 251 | Coils | Coil | 251 | 251 | - | - | |
| Glsi14g0350 | 251 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 133 | 150 | IPR020892 | GO:0003755|GO:0006457 | |
| Glsi14g0350 | 251 | SUPERFAMILY | Cyclophilin-like | 74 | 251 | IPR029000 | - | |
| Glsi14g0350 | 251 | FunFam | Peptidyl-prolyl cis-trans isomerase | 73 | 251 | - | - | |
| Glsi14g0350 | 251 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 196 | 208 | IPR002130 | GO:0000413|GO:0003755 | |
| Glsi14g0350 | 251 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 138 | 150 | IPR002130 | GO:0000413|GO:0003755 | |
| Glsi14g0350 | 251 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 181 | 196 | IPR002130 | GO:0000413|GO:0003755 | |
| Glsi14g0350 | 251 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 209 | 224 | IPR002130 | GO:0000413|GO:0003755 | |
| Glsi14g0350 | 251 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 104 | 119 | IPR002130 | GO:0000413|GO:0003755 | |
| Glsi14g0350 | 251 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 88 | 249 | IPR002130 | GO:0000413|GO:0003755 | |
| Glsi14g0350 | 251 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 86 | 251 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi14g0350 | Glsi-ChrGlsi14 | 4365898 | 4372506 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi14g0350 | 98 | 249 | U-box Gene Family | AT5G67530 | 43.137 | 3.74e-27 | 107 |