Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0345 ATGAAAGTCCCTTGTTGTTCGGTTTGTCAAACGCGGTACAACGAGGAGGAGAGGATCCCACTTCTGCTCCAATGCGGACATGGATTTTGCAGAGACTGTCTTTCGAGAATGTTCTCGGCGTCCGCTGATACGACGTTGCCGTGTCCGAAGTGTCGCCATGTGTCCACTGTCGGGAACTCTGTTCAAGCTCTGCGCAAGAACTATGCCGTGCTCGCGCTTATTCACACGGCTTCCAATGCGTCGGGGTCGAATTTCGACTGTGACTTCACGGACGATGAAGAAGGGGGTGAAAATGATGACGAAGATGGGGACAATGACGATGACTCAGTCATTCGCCGCAGGTGTAGCCGTGGGTCCCAGACATCGAGCTCCAGCGGGTGTGGGCCCGTGATTGAGGTTGGGGTGCACGGAGACTTGAAATTACTGCGGCGGATAGGAGAGGGGAGGAGGGCTGGTATGGAAATGTGGACGGCGGTGATCAGCGGTGGCGGAAGTGGACGGTGCAGACACCATGTGGCGGTGAAGAAGGTTGCAATAGCGGAGGAGATGGATTTGGAGTGGGTGCAGGGGCAGCTTGAGAATTTGCGTCGTGCTTCAATGTGGTGTAGAAATGTGTGCACGTTTCATGGGGCAATGAGAGTCGAAGATAGTTTGTGTCTAGTGATGGACCGCTGTTATGGATCAGTTCAGTCTGAGATGCAGCGCAATGAGGGGAGGCTTACTTTGGAGCAAGTCCTAAGATATGGGGCAGACATTGCACGAGGAGTGGCTGAGCTTCATGCTGCAGGTGTTGTTTGTATGAACCTAAAGCCATCCAATCTTCTTCTTGATGCAAATGGTCATGCAGTGGTTTCCGATTATGGACTTGCTCCAATTCTGAAGAAGCCTTCCTGTTGGAAGGCCCGACCAGAGTGTGACTCCTCAAAGATCCATTCCTGTATGGAATGTATAATGCTCAGTCCACATTACACAGCTCCAGAGGCTTGGGAACCTGTGAAGAAGTCATTAAATTTGTTCTGGGATGATGCAATAGGTGTATCTGCAGAGTCGGATGCTTGGAGTTTTGGTTGTACATTGGTGGAAATGTGCACGGGTTCTGTTCCTTGGGCTGGTTTAAGTGCAGAGGAAATTTATCGAGCTGTTATCAAGGCACGGAAATTGCCTCCACAATATGCTAGTGTTGTTGGTGGTGGAATTCCTAGAGAATTGTGGAAGATGATTGGAGAGTGCTTGCAGTTCAAGCCATCCAAAAGACCTAGTTTTAATGCAATGCTAGCAATATTTCTGCGTCATTTGCAGGAAATACCACGCAGTCCTCCTACAAGCCCTGATAAGTATGTCTGTGAAATTATTGTTGACTCTGCGTTAAATGTGATGGAGCATTCCCTTACACCTGTATTGGAAGTTCCTCAGGATTATGTAAGCCAGCTTCATCGACTTGTGTCTGAAGGGAATGTTAGAGGTGTTAGACATGTTCTTGCAAAGGCTGTATCAGTAAATGGTAGCAATTATATATCTTCTCTATTGGAAGCCCAAAATGCTGATGGGCAAACAGCTCTCCACTTGGCTTGTAGACGTGGTAGTGCCGAACTTGTTGAGGCTATTTTGGAGTGCAAAGAGGCAAATGTTGATGTCTTGGATAAAAGTGGAGATCCTCCTCTTGTTTTTGCTTTAGCAGCTGGATCTCCAGAATGTGTTCGTATTCTTATTAAAAGAAATGCTTATGTGAGGTCTCGGTTGAGAGATGGCTTTGGCCCATCTATTGCTCACATTTGTGCCTATCATGGCCAGCCAGATTGCATGCGAGAACTACTATTGGCTGGAGCTGATCCCAATGCTGTGGATGATGAAGGGGAATCTGTACTGCATAGTGCAGTTGCCAAGAAGTATACGGATTGTGCTCTTGTGATATTAGAAAATGGGGGCTGTAGATCAATGGCCATCTTAAATTCAAAGAATCTGACACCACTGCACTTGTGTGTGGCAACATGGAATGTGGCTATTGTAAAAAGATGGGTGGAAGTTGCAACATCTGATGAGATTGCTGAAGCAATTGACATACCAAGCCCTATTGGCACTGCATTGTGCATGGCAGCTGCATCTAAGAAAGACCATGAAATTGAGGGGAGAGAACTGGTGCGAATATTGCTTGCTGCAGGTGCAGACCCATCTGCTCAGGACTCGCAGAATGGGCGGACAGCATTGCACACAGCTGCCATATCTAATGATGTTGAGTTGGTTAATGTTATTCTTGCTGCCGGTGTTGATGTGAACATTCATAGTGAGCACAATAGTATACCTCTTCACTTAGCTTTAGCTAGGGGAGCAAAATCATGTATTGGATTGCTTCTATCTGCTGGAGCAGATTATAATTTGCAGGATGACGATGGTGACAATGCTTTCCATATAGCAGCAGATACAGCAAAAATGACACGCGAAAATCTTGACTGGCTCATCGTTATGCTAAGAAATCCTGATGCTGATGTTGAAGTCAGAAACCATAGGCAAGTTATGTTTCCTGACAGTGGCCGGACGCTTCGTGACATCTTAGAGGCCCTTCCCCGAGAATGGATATCAGAAGATCTGATGGAGGCTCTCATGTATAGAGGAGTTTATCTGTCTCCTACAATATTTGAAGTGGGAGATTGGGTGAAGTTTGAAAGAACTGTCACAACTCCAACATATGGTTGGCAAGGTGCTACATCAAAGAGTGTAGGCTTTGTGCAAAGCGTTCCAGACAGAGATAATCTCATCGTTTCATTTTGTTCTGGAGAGGCTCGTGTTTTAGCAAATGAAGTTGTGAAAGTCATTCCATTGGACAGGGGACAACATGTACAGCTTAAAGCAGAGGTAAAAGAGCCCAGGTTTGGTTGGCGTGGGCAATCACGTGACAGCATAGGCACAGTATTATGTGTTGATGATGATGGGATCCTACGTGTTGGGTTTCCTGGAGCATCCAGAGGATGGAAAGCTGACCCAGCAGAGATGGAACGGGTTGAGGAATTCAAGGTCGGAGACTGGGTTCGTATTCGTCCCACTCTTACATCTGCAAAGCATGGATTAGGAGCTGTGACACCAGGAAGCATTGGTATTGTATATTGTATCAGACCAGACAGTAGTCTGTTAATAGAACTGAGCTATCTTCCAGCTCCATGGCATTGTGAACCAGAAGAGGTTGAGCATGTTGCTCCTTTTAAGATTGGGGATCGGGTATGTGTGAAGCGATCTGTTGCAGAACCTAGATATGCTTGGGGAGGTGAGACACATCATAGTGTCGGAAGGATTAGTGAGATTGAGAATGATGGTCTCTTAATAATAGATATACCTAACCGACCCATTTCATGGCAAGCTGATCCATCTGATATGGAGAAGCTGGATGATTTTAAGGTTGGAGATTGGGTCAGAGTGAAAGCTTCAGTGTCTTCCCCAAGATATGGATGGGAGGATATTACTAGGAACAGTATTGGGGTAATTCATAGCTTGGATGAAGACGGTGATATGGGGGTTGCCTTTTGCTTCAGAAGTAAACCTTTTTGTTGCTCTGTCACTGATGTGGAGAAAGTTCCGCCTTTTGAAGTGGGGCAAGAAATTCATGTGATGCCATCTGTTACTCAGCCACGACTTGGATGGTCAAATGAATCACCAGCTTCTGTTGGAAAAATAGTGAAAATTGACATGGATGGTGCTCTCAATGTGAGAGTCACTTGTAGACAGAGCTTGTGGAAAGTTTCTCCTGGAGATGCAGAACAACTTCCAGGATTAGAAGTTGGTGATTGGGTACGGTCAAAACCAAGCCTAGGAACCAGACCAAGTTATGACTGGAATAGCGTTGGAAAAGAAAGTATAGCTGTTGTACATAGTGTACAGGATTCTGGATACTTGGAGTTGGCTTGCTGTTTTCGGAAAGGGAAGTGGATCAATCATTATACAGATGTTGAAAAGGTTCCTTGCTTTAAAGTCGGGCAGTATGTTAGGTTTCGAACTGGCTTGGTTGAACCGAGGTGGGGCTGGAGAGGAGCTCTGCCTGAATCTCGAGGTGTTATAATTAGCATTAATGCTGATGGGGAAGTGAGGGTGTCATTCTTTGTTTTGCCAGGTCTCTGGAGAGGAGATCCTGCAGACCTTGAAATTGAGCAGATGTTTGGAGTGGGAGAGTGGGTGAGGTTTAAAGATAATGCAAAAAATTGGAAATCAATTGGGCCAGGTAGCGTTGGGGTTGTACGTGGAATAGGGTTTGATGGTGATGAATGGGAGAGAAGCACTTGTGTTGGCTTTTGTGGGGAGCCGGAAAGCTGGGTAGGACCAACTTCACATCTCGAAAGAGTTGACAAACTCCTTATGGGACAGAGGGTTAGAGTTAAACAATCTGTAAAGCAACCGAGGTTTGGGTGGTCAGGGCACACCCATGCTAGCATTGGAATCATATCAGCAATTGATGGTGATGGAAAGCTTCGAATATACACTCCAGTAGGATCAAAAGCATGGGTGTTGGACCCATCAGAAGTGGATTTGGTGGAAGAGGAGGAGCTACATATTGGAGATTGGGTCAAGGTTAGAGCATCAGTATCTACTCCAACCCACCAGTGGGGAGAAGTGAGTCATTCAAGCATTGGGGTGGTGCATCGGATGGAACATGAGGATCTGTGGGTGGCATTCTGTTTCATGGAGAGACTATGGCTTTGTAAGGCATGTGAAATGGAACGAGTAAGGCCCTTCAAAATAGGCGACAAGGTAAGGATCAGAGACAGATTGCTAGCCCCAAGATGGGGTTGGGGAATGGAGACACATGCTAGTAAGGGACAGGTGGTAGGGGTAGATGCTAATGGAAAACTAAGAATTAGGTTCCGGTGGAGGGAAGGGAAGCCCTGGATAGGAGACCCTGCTGATATTGTTCTTGATGAGAATTGA 4908 0.4629 MKVPCCSVCQTRYNEEERIPLLLQCGHGFCRDCLSRMFSASADTTLPCPKCRHVSTVGNSVQALRKNYAVLALIHTASNASGSNFDCDFTDDEEGGENDDEDGDNDDDSVIRRRCSRGSQTSSSSGCGPVIEVGVHGDLKLLRRIGEGRRAGMEMWTAVISGGGSGRCRHHVAVKKVAIAEEMDLEWVQGQLENLRRASMWCRNVCTFHGAMRVEDSLCLVMDRCYGSVQSEMQRNEGRLTLEQVLRYGADIARGVAELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLAPILKKPSCWKARPECDSSKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDAIGVSAESDAWSFGCTLVEMCTGSVPWAGLSAEEIYRAVIKARKLPPQYASVVGGGIPRELWKMIGECLQFKPSKRPSFNAMLAIFLRHLQEIPRSPPTSPDKYVCEIIVDSALNVMEHSLTPVLEVPQDYVSQLHRLVSEGNVRGVRHVLAKAVSVNGSNYISSLLEAQNADGQTALHLACRRGSAELVEAILECKEANVDVLDKSGDPPLVFALAAGSPECVRILIKRNAYVRSRLRDGFGPSIAHICAYHGQPDCMRELLLAGADPNAVDDEGESVLHSAVAKKYTDCALVILENGGCRSMAILNSKNLTPLHLCVATWNVAIVKRWVEVATSDEIAEAIDIPSPIGTALCMAAASKKDHEIEGRELVRILLAAGADPSAQDSQNGRTALHTAAISNDVELVNVILAAGVDVNIHSEHNSIPLHLALARGAKSCIGLLLSAGADYNLQDDDGDNAFHIAADTAKMTRENLDWLIVMLRNPDADVEVRNHRQVMFPDSGRTLRDILEALPREWISEDLMEALMYRGVYLSPTIFEVGDWVKFERTVTTPTYGWQGATSKSVGFVQSVPDRDNLIVSFCSGEARVLANEVVKVIPLDRGQHVQLKAEVKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGAVTPGSIGIVYCIRPDSSLLIELSYLPAPWHCEPEEVEHVAPFKIGDRVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIDIPNRPISWQADPSDMEKLDDFKVGDWVRVKASVSSPRYGWEDITRNSIGVIHSLDEDGDMGVAFCFRSKPFCCSVTDVEKVPPFEVGQEIHVMPSVTQPRLGWSNESPASVGKIVKIDMDGALNVRVTCRQSLWKVSPGDAEQLPGLEVGDWVRSKPSLGTRPSYDWNSVGKESIAVVHSVQDSGYLELACCFRKGKWINHYTDVEKVPCFKVGQYVRFRTGLVEPRWGWRGALPESRGVIISINADGEVRVSFFVLPGLWRGDPADLEIEQMFGVGEWVRFKDNAKNWKSIGPGSVGVVRGIGFDGDEWERSTCVGFCGEPESWVGPTSHLERVDKLLMGQRVRVKQSVKQPRFGWSGHTHASIGIISAIDGDGKLRIYTPVGSKAWVLDPSEVDLVEEEELHIGDWVKVRASVSTPTHQWGEVSHSSIGVVHRMEHEDLWVAFCFMERLWLCKACEMERVRPFKIGDKVRIRDRLLAPRWGWGMETHASKGQVVGVDANGKLRIRFRWREGKPWIGDPADIVLDEN 1635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0345 1635 Gene3D - 465 583 IPR036770 -
Glsi14g0345 1635 SUPERFAMILY Ankyrin repeat 581 807 IPR036770 -
Glsi14g0345 1635 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Glsi14g0345 1635 ProSiteProfiles Ankyrin repeat region circular profile. 763 795 - -
Glsi14g0345 1635 FunFam E3 ubiquitin-protein ligase KEG 729 869 - -
Glsi14g0345 1635 ProSiteProfiles Ankyrin repeat region circular profile. 730 759 - -
Glsi14g0345 1635 Pfam Ankyrin repeats (many copies) 767 805 IPR002110 GO:0005515
Glsi14g0345 1635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 84 IPR013083 -
Glsi14g0345 1635 Gene3D - 584 728 IPR036770 -
Glsi14g0345 1635 ProSiteProfiles Ankyrin repeat profile. 515 548 IPR002110 GO:0005515
Glsi14g0345 1635 SMART ANK_2a 617 648 IPR002110 GO:0005515
Glsi14g0345 1635 SMART ANK_2a 549 578 IPR002110 GO:0005515
Glsi14g0345 1635 SMART ANK_2a 652 683 IPR002110 GO:0005515
Glsi14g0345 1635 SMART ANK_2a 584 613 IPR002110 GO:0005515
Glsi14g0345 1635 SMART ANK_2a 472 501 IPR002110 GO:0005515
Glsi14g0345 1635 SMART ANK_2a 730 759 IPR002110 GO:0005515
Glsi14g0345 1635 SMART ANK_2a 763 792 IPR002110 GO:0005515
Glsi14g0345 1635 SMART ANK_2a 515 545 IPR002110 GO:0005515
Glsi14g0345 1635 SMART ANK_2a 690 725 IPR002110 GO:0005515
Glsi14g0345 1635 SMART ANK_2a 796 831 IPR002110 GO:0005515
Glsi14g0345 1635 Pfam Ankyrin repeats (3 copies) 693 759 IPR002110 GO:0005515
Glsi14g0345 1635 Pfam Ankyrin repeats (3 copies) 495 576 IPR002110 GO:0005515
Glsi14g0345 1635 Pfam Ankyrin repeats (3 copies) 590 670 IPR002110 GO:0005515
Glsi14g0345 1635 ProSiteProfiles Protein kinase domain profile. 139 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g0345 1635 SUPERFAMILY Ankyrin repeat 473 583 IPR036770 -
Glsi14g0345 1635 PRINTS Ankyrin repeat signature 712 726 IPR002110 GO:0005515
Glsi14g0345 1635 PRINTS Ankyrin repeat signature 516 531 IPR002110 GO:0005515
Glsi14g0345 1635 MobiDBLite consensus disorder prediction 85 129 - -
Glsi14g0345 1635 Pfam Mind bomb SH3 repeat domain 1381 1502 IPR040847 -
Glsi14g0345 1635 Pfam Mind bomb SH3 repeat domain 1002 1122 IPR040847 -
Glsi14g0345 1635 Pfam Mind bomb SH3 repeat domain 1254 1375 IPR040847 -
Glsi14g0345 1635 Pfam Mind bomb SH3 repeat domain 878 996 IPR040847 -
Glsi14g0345 1635 Pfam Mind bomb SH3 repeat domain 1510 1629 IPR040847 -
Glsi14g0345 1635 Pfam Mind bomb SH3 repeat domain 1128 1246 IPR040847 -
Glsi14g0345 1635 Gene3D - 729 838 IPR036770 -
Glsi14g0345 1635 Pfam Protein kinase domain 169 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g0345 1635 CDD RING-HC_KEG-like 3 59 - -
Glsi14g0345 1635 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 1 1634 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Glsi14g0345 1635 FunFam E3 ubiquitin-protein ligase KEG 226 442 - -
Glsi14g0345 1635 Gene3D Transferase(Phosphotransferase) domain 1 136 441 - -
Glsi14g0345 1635 ProSiteProfiles Ankyrin repeat profile. 763 795 IPR002110 GO:0005515
Glsi14g0345 1635 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Glsi14g0345 1635 ProSiteProfiles Ankyrin repeat region circular profile. 515 537 - -
Glsi14g0345 1635 ProSiteProfiles Ankyrin repeat profile. 584 616 IPR002110 GO:0005515
Glsi14g0345 1635 MobiDBLite consensus disorder prediction 87 106 - -
Glsi14g0345 1635 Pfam RING-type zinc-finger 6 49 IPR027370 -
Glsi14g0345 1635 SMART ring_2 6 51 IPR001841 -
Glsi14g0345 1635 ProSiteProfiles Ankyrin repeat profile. 730 762 IPR002110 GO:0005515
Glsi14g0345 1635 SUPERFAMILY RING/U-box 5 61 - -
Glsi14g0345 1635 FunFam E3 ubiquitin-protein ligase KEG 455 685 - -
Glsi14g0345 1635 SUPERFAMILY Protein kinase-like (PK-like) 135 443 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0345 Glsi-ChrGlsi14 4318417 4330142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0345 153 425 MAP Kinase Kinase Kinase AT4G18950 25.090 4.16e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Glsi14g0345 Pkinase 9.4e-30 CL0016