Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0319 ATGGATGATGCCTCCTCCGACCACAAGCTCTGCGGTTTCCTATTTGCGGTTCTTACAGTTGCTCCGTCGCAACCCGACCCGTGTGGTAGTCTAGGTTTCAAAGAGCGCTGCGAAATCTACGGCGATGGTTCTGGTGTCGTCGGGTTTCGGTCTGAAAACGGTGTCGTTTTAGTTCCGGTGGACTCGGTGACAAAGCGGATTGGGAACGAGGATGCCTCTCCTTCCGTTTCAGAGCAATGCAAAGCTGTGAAGAGGGATTCTGGGCTTGATTCCGATTGCAGTGGCAAGATTACGCCACGGGGTTCGTGGAAGAAGGGCGCTTCTGGGAGAAAAAATGGTGTAGTGGCGGGAAGTGGTAGCTTGAGGACGAGGAGGATGACGAAAATTGGGATGGTGAACGGGAGTGTTAGTGTGGTTCACCAGCTTCACGCTCTGGTTAGCCGCAAGTGCTTGAAGATTGATGCTCGAGTGATTTTGGTTGAGCTTGGTAATTGTGCCGAGGCGAGGGCTGTGGTACTGGTCGATGTGTATCTCCCTATTGTATTGTGGAGTGGATGGCAGTTTCCAAGATGCGGGTCGACTGCCGGTGCTCTTTTCCGGCATTTGAGCTGTGATTGGGGTGAGAGAATCTCAATGCTTTCTTGCTCAGACTATTGTAGGAAGACTCAGGGGGTGAGTGAGAGCATTTGGAGCCTTTCTGACTGTCATGTACTTGGTTGCAAGCTCCATTACCATGCAACTGATTCTTCAAAGAATAGTCTATTTGAACTTCATGAGATTTTTAAGAGTGTACCTGGTGTAGGAAAACAGCAGAAATCTGATAGTTCCAGAATAGTACCCATGAATGACTCTTGGAGATCTGGGATTTGGGAGATATCTGATGACATTTTAACTCAGATTATAGCTTCCCTTGGCCCAATGGATCTTGCCAGGGTTTCTGCTACTTGTCGCCATCTAAGATCCTTGGCTGCTTTAGTGATGCCTTGTACAAAGTTAAAGCTGTTTCCTCATCAGCAGGCAGCAGTTGAGTGGATGTTGCATCGCGAACGAAATGCTGAACACTTGGCACATCCTTTGTATGTTACTTTCTCAACTGAGGATGGCTTTAGTTTCCATGTAAATACTGTATCTGGTGAAATAGTCATTGGGGCACCTCCCACCATCAAAGATTTTTGTGGTGGAATGTTCTGTGATGAGCCTGGCTTGGGTAAGACAGTAACAGCTCTTTCTCTTATTATGAAGACAAAATGTACATTAGCAGATCCGCCAGATGGTGCAAAAGTGGTTTGGTGTCATCATAATGGTAATCAGAAATGCGGCTATTATGATATTAGCGGTAATTACATCATTGACAGTAGTAATTTGGGGAAGAGGGATATATGCCAGGTTGCTTTGAGAAATAATGAGAACCATGATTACTCCTCCAAAAGAGCCAGATTGGTGGTTCCTATTGAGCAAATCACTGGACCTAATAGTTCATGTTCTGGGGAACAAAATAAATCACCTATAGGTGCATGCTCTGAGCAGCCAGTGCCTGCAAGTCGATGCACTTGGAGCTTGAGTTGCATAAAGAAAAATCTATATTTCCCTTATGATGAGGAAGCTGGGTTTTCCAACGAAAGAAAAGTTTGTGAAAACCTTTCTAAACTAAAGCATCCATCAGATGTTGCATCTCATATATCTCAAAATAAGCTAGTTGATACTTCATATGGACATGAAAAGGATTACAGGAGGTCTGGGAAACCTACAGTGGATCATTTCGAGAACAATGACACTTGGATTCAGTGTGATGCTTGTCACAAGTGGCGAAAGGTTGCAGATACCAGTATGGCTAATACTAGTACAGTGTGGTTTTGTAGTATGAACACTGACCCTTTGTATCAGAGTTGTAGTGTCCCTGAACAATCTTGGCATAATAGCTGCCAAATAACTTACTTACCAGGATTTCATTTGAAAGGTACTGCTGGGGGTGAAAAACAAAATGTTTCCTTTTTCACTGGTGTACTTAAGGAGCATTACACATTGATAAATTCTCAGACAAAGAAATCCCTGATTTGGCTGGCTAGAATTTCTCCTGACAAGCTTGCTGAAATGGAAACAAATGGCATACGGGGTCCTATTTTAAGCACCTGTGCTGTGTCTAGTGGATATATTAATTCATACCACAAAATATTTCAAGCATTTGGCCTTATTAAGAGACTAGAGAAAGGTGTAAGCAGGTGGTACTACCCACAAAATCTTAATAATTTGGTTTTTGATGTGGCTGCTCTTGGCATGGCTCTCCGTGAGCCATTAGATTCAGTTAGGCTATACTTGTCAAGAGCAACCCTTGTAGTTGTTCCTGCCAACTTAGTGGATCATTGGAAAACGCAAATAGAAAAGCATGTCAAATCTAGTCAACTGCGACTTTGTGTTTGGACTGATCATCGGAAGCCATCTGTACACAGTCTGGCTTGGGATTATGATGTTGTCATTACTACATTTAGCCGTCTGAGTGCAGAGTGGAGCCCACGTAAGAGAAGTGTTTTGATGCAAGTCCATTGGCTTAGGATCATGTTAGATGAAGGGCACACTCTTGGCTCAAGCCTCAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGATGGCTTCAAATCGGTGGATACTAACAGGAACACCAACTCCTAACACTCCTAAAAGCCAACTATCACATCTACAACCATTGCTAAGATTCCTTCATGAAGAAGCTTATGGACAGAATCAAAAGTCATGGGAAGCTGGCATCCTTAGGCCATTTGAGGCAGAGATGGAGGAAGGAAGGTCTCGTCTGTTACATCTACTTTGTAACTGCATGATTAGTGCAAGAAAGATAGATTTGCAGAATATTCCACCATGCATCAAGAAAGCTGTTTTTCTAGATTTTACTGAAGAGCACTCCAGAAGTTACAATGAATTGGTACTAACAGTTCGGCGTAATATTTTAATGGCTGATTGGAATGATCCTTCACATGTTGAGAGTCTACTGAATCCAAAACAATGGAAATTTAGGAGTGCAACTATAAAAAATGTCAGGCTCTCATGCTGTGTTGCTGGACATATTAAATTTACACATGCTGGTGAAGATATTCAGGAAACAATGGATATGTTATTGGAAAGTGGTCTGGATCCTACCTCAGGAGAGTATGCCTCCATAAGATATAATCTCCTTTATGGTGGCCCCTGTGTCAGATGTAAGGAATGGTGCCGCCTTCCTTTCATTACACCATGCCAGCATCTATTGTGCCTTGACTGTGTTGCTTTAGACAATACGAGATGTTCTTATCCTGGATGTGGTAAATTATATGAGATGCAGAGTCCTGATACACTAGCCCGCCCTGAAAATCCTAACCCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAACAGGATAATTGGGATCCTGATTGGCAATCAACATCTAGTAGCAAGGTCTCCTATCTCATCCAGAGATTGAAAACTTTACAGGAAGCTAATAAAGAGATGGGTTACTATATGGACAATAGCAATGATCAGATGCACACCGAGAGTAGTTGCCCTTTGCAGATAGGAGATGCCAAATCAACATTCCAGCAATGCCCTCCAAGCACTGAGCCCAATAAGATCCCTGAGAAAGTTTTGATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGTCAATTGCTGGTATTAAATATACTGGGATGTATAGCCCAATGCATTCTAGCAACAAGAAGAAGTCGCTAGCCATGTTCCAGCATGATTCCAGTTGTATGGCACTTGTGATGGATGGAAGTGCTGCATTGGGTCTCGACTTGAGTTTTGTTACACACGTCTTTTTAATGGAACCAATTTGGGACAGAAGTATGGAGGAACAAGTAATTAGTCGTGCTCATCGCATGGGTGCTTGTCGTCCCATTCATGTAGAAACATTAGCAATGTGTGGTACAATCGAAGAGCAAATGCTAGAATTTTTACAGGATGCTGATAAATGTAGGAAATTCCCAGCTAATGTTGTTGCCAAATCTGAAGATGAAGGTGGACGAGGATATCGATCATTGCATGATTTTGCTGAAAACAGTTATCTACTGAAACTTAAATTTGTGCACACCAATCCTGACATTGTAGAAGGAGTTTGA 4164 0.4263 MDDASSDHKLCGFLFAVLTVAPSQPDPCGSLGFKERCEIYGDGSGVVGFRSENGVVLVPVDSVTKRIGNEDASPSVSEQCKAVKRDSGLDSDCSGKITPRGSWKKGASGRKNGVVAGSGSLRTRRMTKIGMVNGSVSVVHQLHALVSRKCLKIDARVILVELGNCAEARAVVLVDVYLPIVLWSGWQFPRCGSTAGALFRHLSCDWGERISMLSCSDYCRKTQGVSESIWSLSDCHVLGCKLHYHATDSSKNSLFELHEIFKSVPGVGKQQKSDSSRIVPMNDSWRSGIWEISDDILTQIIASLGPMDLARVSATCRHLRSLAALVMPCTKLKLFPHQQAAVEWMLHRERNAEHLAHPLYVTFSTEDGFSFHVNTVSGEIVIGAPPTIKDFCGGMFCDEPGLGKTVTALSLIMKTKCTLADPPDGAKVVWCHHNGNQKCGYYDISGNYIIDSSNLGKRDICQVALRNNENHDYSSKRARLVVPIEQITGPNSSCSGEQNKSPIGACSEQPVPASRCTWSLSCIKKNLYFPYDEEAGFSNERKVCENLSKLKHPSDVASHISQNKLVDTSYGHEKDYRRSGKPTVDHFENNDTWIQCDACHKWRKVADTSMANTSTVWFCSMNTDPLYQSCSVPEQSWHNSCQITYLPGFHLKGTAGGEKQNVSFFTGVLKEHYTLINSQTKKSLIWLARISPDKLAEMETNGIRGPILSTCAVSSGYINSYHKIFQAFGLIKRLEKGVSRWYYPQNLNNLVFDVAALGMALREPLDSVRLYLSRATLVVVPANLVDHWKTQIEKHVKSSQLRLCVWTDHRKPSVHSLAWDYDVVITTFSRLSAEWSPRKRSVLMQVHWLRIMLDEGHTLGSSLNLTNKLQMAISLMASNRWILTGTPTPNTPKSQLSHLQPLLRFLHEEAYGQNQKSWEAGILRPFEAEMEEGRSRLLHLLCNCMISARKIDLQNIPPCIKKAVFLDFTEEHSRSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSATIKNVRLSCCVAGHIKFTHAGEDIQETMDMLLESGLDPTSGEYASIRYNLLYGGPCVRCKEWCRLPFITPCQHLLCLDCVALDNTRCSYPGCGKLYEMQSPDTLARPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSSKVSYLIQRLKTLQEANKEMGYYMDNSNDQMHTESSCPLQIGDAKSTFQQCPPSTEPNKIPEKVLIFSQFLEHIHVIEQQLSIAGIKYTGMYSPMHSSNKKKSLAMFQHDSSCMALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGACRPIHVETLAMCGTIEEQMLEFLQDADKCRKFPANVVAKSEDEGGRGYRSLHDFAENSYLLKLKFVHTNPDIVEGV 1387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0319 1387 Gene3D - 1111 1368 IPR027417 -
Glsi14g0319 1387 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1205 1349 IPR001650 -
Glsi14g0319 1387 SMART ultradead3 330 916 IPR014001 -
Glsi14g0319 1387 Pfam F-box domain 292 322 IPR001810 GO:0005515
Glsi14g0319 1387 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 740 905 IPR014001 -
Glsi14g0319 1387 Pfam CW-type Zinc Finger 592 635 IPR011124 GO:0008270
Glsi14g0319 1387 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 773 930 IPR027417 -
Glsi14g0319 1387 Gene3D - 579 640 - -
Glsi14g0319 1387 Pfam Helicase conserved C-terminal domain 1211 1310 IPR001650 -
Glsi14g0319 1387 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 140 1336 - -
Glsi14g0319 1387 CDD DEXDc_SHPRH-like 762 946 - -
Glsi14g0319 1387 ProSitePatterns Zinc finger RING-type signature. 1083 1092 IPR017907 -
Glsi14g0319 1387 Gene3D - 756 949 IPR038718 -
Glsi14g0319 1387 ProSiteProfiles Zinc finger CW-type profile. 587 638 IPR011124 GO:0008270
Glsi14g0319 1387 SUPERFAMILY F-box domain 286 323 IPR036047 GO:0005515
Glsi14g0319 1387 CDD SF2_C_SNF 1215 1320 - -
Glsi14g0319 1387 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 418 IPR027417 -
Glsi14g0319 1387 CDD F-box_SF 291 323 - -
Glsi14g0319 1387 SMART helicmild6 1228 1310 IPR001650 -
Glsi14g0319 1387 Pfam SNF2-related domain 337 1003 IPR000330 GO:0005524|GO:0140658
Glsi14g0319 1387 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 847 1336 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0319 322 413 RAD5 or RAD16-like Gene Family AT5G22750 31.000 4.43e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi14g0319 SNF2_N 2.6e-97 CL0023