Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0310 ATGGTGCACCTTTGGTCCTTTCATGTAGGAACAACAATTAGGGTGATAGAATTGAAAGAAATTGATGTTCATGAATCATGGCGGACGGTTGCTTGTATTGACATGGCATCTAGCAATCCATTCTTTGATGATATACGGACAAAATCTGATGTTGATCCTCCTCCAAGTGAAGAGTTGACAGATGTTAGTGAACTTGTGAATGATCCTACAAAACCTGCTCTAAAACCTAATGTGACTGTTTCAAGCAGTGTTCGCGATCTTTTAGAATGCCCTGTGTGCTTGAATGCCATGTACCCTCCAATCCACCAGTGTTCAAATGGTCACACCTTATGTTCAGGATGCAAACCCAGGGTCCACAATCGGTGCCCTACTTGTAGGCATGAACTTGGCAATATCAGATGTCTGGCATTGGAGAAGGTGGCTGCATCTTTGGAACTTCCCTGTAAATATCAAACTTTTGGTTGCGTGGGCATATATCCATACTACAGCAAGCTAAAACATGAATCTCAATGTGCATATAGACCTTATAATTGTCCGTATGCTGGTTCAGAATGCACTGTTATTGGTGATATACCTGACCTGGTGGCCCATCTGAAAGACGATCACAAAGTGGACATGCACAATGGTAGCACGTTTAACCATCGATATGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGCTGACGGTTTTCAGTTGCTTTGGTCAGTATTTTTGTCTACACTTCGAAGCTTTTCAGCTCGGAATGGCTCCGGTCTACATCGCCTTTTTGCGTTTCATGGGTGATGATAATGAGGCAAAGAACTATAGCTACAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGACTTGGCAGGGGGTGCCTAGAAGCATTAGGGACAGCCATCGGAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAACGGAACATGGCTCTCTTCTTTTCTGGGGGTGACCGGAAGGAATTGAAGCTACGGGTTACTGGGAGGATTTGGAAAGAACAGTGA 1017 0.4385 MVHLWSFHVGTTIRVIELKEIDVHESWRTVACIDMASSNPFFDDIRTKSDVDPPPSEELTDVSELVNDPTKPALKPNVTVSSSVRDLLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCAYRPYNCPYAGSECTVIGDIPDLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMTWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0310 338 FunFam E3 ubiquitin-protein ligase SINAT5-like 199 331 - -
Glsi14g0310 338 ProSiteProfiles Zinc finger RING-type profile. 90 126 IPR001841 -
Glsi14g0310 338 Pfam Seven in absentia protein family 132 331 IPR018121 GO:0005737|GO:0006511|GO:0007275
Glsi14g0310 338 CDD RING-HC_SIAHs 88 126 - -
Glsi14g0310 338 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 74 337 - -
Glsi14g0310 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 198 IPR013083 -
Glsi14g0310 338 SUPERFAMILY TRAF domain-like 143 335 - -
Glsi14g0310 338 CDD Sina 204 332 - -
Glsi14g0310 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 142 IPR013083 -
Glsi14g0310 338 SUPERFAMILY RING/U-box 82 130 - -
Glsi14g0310 338 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 199 331 IPR008974 GO:0005515
Glsi14g0310 338 FunFam E3 ubiquitin-protein ligase SINAT3 142 198 - -
Glsi14g0310 338 ProSiteProfiles Zinc finger SIAH-type profile. 143 203 IPR013010 GO:0008270
Glsi14g0310 338 FunFam E3 ubiquitin-protein ligase SINAT5-like 48 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0310 Glsi-ChrGlsi14 3967146 3970290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0310 81 338 C3H Transcription Factor Family AT2G41980 79.457 2.09e-160 449