Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0297 ATGAACGCCCCAGAGCTTCAGGTGTGGAACAATGCTGCCTTTGACAATGAAGAATCTGGAGGCTTCCCGATGAAAAATTCTTGGTCTAGTCTTCACCCTGTGTTCGAGAACCATTCTGAGTCGCTTGATTCTGATTGTAGCAAAGAAAATTTGAGCCCTGCCATGGTAAATTCTCCCGTTTCTGTTAAATCTTTGATACCCATCAAGCCCCTTCATTCAAACGGTGTCATAGGGAATTCCCAGAGCAAGAACTCAAAGGTTTTGGTCAAAAATGGTGGGAATGTCGAAAATTCATCGACGATATCGAAGAAGGGTTGCGAACAAGAAGATGGGAAAACTCGTGACGAGAAGAAGATCGATTCTGAGATTGAGGAGATTGAGAATGAGATTAAACGGCTGTCGTCAAGATTGGAAGCGCTTCGACTGGAAAAAGCTGAACGGAATGGTAAAACAATCGAAAGGCGAGGAAGAATCGTGCCTGCGAAATTCATGGAAGCCAAACAGAGTGTTAAGAAGACTGAAGAGCCTCCATTGTCGTCAAGTGCCAGAGCGAAGTTTAATCGGAGAGGTGTCAGTTTGGGGCCATCGGAAATTGTCGCCGGAGCGAGATTTCGTCCACCTGGGAAGCTCGATATCAGTATAACCCCAGTTCAGCCGACGCAGAGTCGACGGAAATCATGCTTCTGGAAACTTCAGGAGATTGATGAAGGAAAAGCAAGGACTGAAAGAAGGAAAAGTTTGAGCCTTAGCCCAAAATCACGAAGAACTGTGAGCAAAATCGAGGCTCAAAAGCAGGCAGCCACTACTGTGGGATCCAAAAAGTGTGGGAAGAAAGAATCTGGGGTTCTTTCATTGATTCAGCCAAGGAAGCTCTTCAAAGACGGGGAAAAATCCGTGCCCACAAAGAAACCATTGAAGCCAGGAAGGGTGGTAGCGAGCAGGTACAACCAGATTTCTGGGAATTCTTCCTCAGCCATGGATGCCCGGAAAAGGTCATTGCCGGAGAACGACAAGGATGATGGTGGTAAGAGATGCGACAAAAGGCTAGCTTCGTCTGTAGGAAGGATGAAGAAGAAGTGGGAGATTCCTGCGGATATTGTGGTTTACCAGAGTGAGGAGGAGGAGAAGAAGAAGCCGTCGTCATCGTCATCGTCATCGTCATCCATGGCGGATATAACTGATCTGCTTCCAAAGATCAAGACAGTTCGATGTGTTGAAGACAGTCCAAGAGGCTCTGGAGCTGCAAAAAGGGTGGCTGAATTGAAGGGGAAGAGATCTTTCTTTTGCCCAGATGAGAATCAGAACGATGATGACAATGATGATGCTGAGCCGTCTGCTTGTCAAGCTCTGAGTTTTGCAAAAGAAGAAGAAGAAGATCGAACCCTAGTTCAGAGAGTTGTTTTCTTTCTTCACTCCGTAGCGGCGTCAGCTCTCTGGTTCTCTCCCTCTCTCTTTGCTTCAATCATGGCTACTGCAAGGACTGTGAAAGACGTGTCGCCTCACGAGTTCGTTAAGGCTTACTCTGCTCATCTCAAGCGATCTGGCAAGATGGAGCTTCCTGAGTGGACTGATATTGTGAAGACTGCAAAATTTAAGGAGTTAGCTCCGTATGATCCTGATTGGTACTATGTTAGAGCCGCTTCCATGGCAAGGAAGATCTACCTCAGAGGGGGCCTTGGTGTTGGTTCTTTCCAGAGGATTTATGGTGGGAGCCAGAGGAATGGTAGCCGTCCTCCTCATTTCTGTAAGAGCAGCGGTGCTATTGCTCGTCACATTCTTCAACAGTTGCAGACCATGAGCATCATCGAAATTGACCCCAAGGGTGGAAGGAGAATCACTTCCAGTGGCCAGCGGGATCTCGACCAAGTGGCCGGTCGGATTGTGGTTGCACCCTGA 1896 0.4757 MNAPELQVWNNAAFDNEESGGFPMKNSWSSLHPVFENHSESLDSDCSKENLSPAMVNSPVSVKSLIPIKPLHSNGVIGNSQSKNSKVLVKNGGNVENSSTISKKGCEQEDGKTRDEKKIDSEIEEIENEIKRLSSRLEALRLEKAERNGKTIERRGRIVPAKFMEAKQSVKKTEEPPLSSSARAKFNRRGVSLGPSEIVAGARFRPPGKLDISITPVQPTQSRRKSCFWKLQEIDEGKARTERRKSLSLSPKSRRTVSKIEAQKQAATTVGSKKCGKKESGVLSLIQPRKLFKDGEKSVPTKKPLKPGRVVASRYNQISGNSSSAMDARKRSLPENDKDDGGKRCDKRLASSVGRMKKKWEIPADIVVYQSEEEEKKKPSSSSSSSSSMADITDLLPKIKTVRCVEDSPRGSGAAKRVAELKGKRSFFCPDENQNDDDNDDAEPSACQALSFAKEEEEDRTLVQRVVFFLHSVAASALWFSPSLFASIMATARTVKDVSPHEFVKAYSAHLKRSGKMELPEWTDIVKTAKFKELAPYDPDWYYVRAASMARKIYLRGGLGVGSFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQTMSIIEIDPKGGRRITSSGQRDLDQVAGRIVVAP 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0297 631 Coils Coil 116 150 - -
Glsi14g0297 631 FunFam 40S ribosomal protein S19 490 631 - -
Glsi14g0297 631 MobiDBLite consensus disorder prediction 371 390 - -
Glsi14g0297 631 MobiDBLite consensus disorder prediction 294 350 - -
Glsi14g0297 631 MobiDBLite consensus disorder prediction 330 350 - -
Glsi14g0297 631 MobiDBLite consensus disorder prediction 314 329 - -
Glsi14g0297 631 MobiDBLite consensus disorder prediction 103 120 - -
Glsi14g0297 631 SUPERFAMILY "Winged helix" DNA-binding domain 494 629 IPR036390 -
Glsi14g0297 631 Pfam Ribosomal protein S19e 494 628 IPR001266 GO:0003735|GO:0005840|GO:0006412
Glsi14g0297 631 SMART Ribosomal_S19e_2 494 630 IPR001266 GO:0003735|GO:0005840|GO:0006412
Glsi14g0297 631 ProSitePatterns Ribosomal protein S19e signature. 578 597 IPR018277 GO:0003735|GO:0005840|GO:0006412
Glsi14g0297 631 PANTHER OS06G0683900 PROTEIN 1 459 - -
Glsi14g0297 631 Gene3D - 482 630 IPR036388 -
Glsi14g0297 631 MobiDBLite consensus disorder prediction 90 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0297 Glsi-ChrGlsi14 3755277 3759771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0297 489 631 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 84.615 6.20e-89 271