Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0289 ATGTCCTCCACCGCTGATCCGCCGCAATCCGCCGCCGGCGTCGGTCTTGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTCCTCATCTCCACCATCATGCTCGCCTCCTACGCCTGCGTCCGCATCAAGGCCAACGGGCGTCGGATTGGCCGCCGTACCTCCTATATCGGCGGCGATGACAGCGACAGCGACGTTCACAGCCAAGGCCATGCCACGGGTAACTCAGGCGAGATAGCAGTGGTCGTTATGGGCCTGGACAAGCCCACGATAGAAGCTTACCCGAAGGTGATACTGGGAGAAAGCCGGCGGCTTCCGAAGCCCAATCACGGTCCGTGCGCCATTTGCTTGTGTGAGTACGTTCAGAACGATACAGTGCGGTGCGTCCCAGAGTGCCAACATTGCTTCCATGCGGAATGCTTGGACGAGTGGCTCCGCTTAAGCGCTACGTGTCCTTTGTGTCGGAACTCTCCGGCTCCGTCGCCGGTTCCTACGCCGGTGGCCACTCCTCTGTCAGAATTAGTTCCACTGGCTTCTCACGCCAGGTGA 549 0.6066 MSSTADPPQSAAGVGLGYGIAIAVSILVLISTIMLASYACVRIKANGRRIGRRTSYIGGDDSDSDVHSQGHATGNSGEIAVVVMGLDKPTIEAYPKVILGESRRLPKPNHGPCAICLCEYVQNDTVRCVPECQHCFHAECLDEWLRLSATCPLCRNSPAPSPVPTPVATPLSELVPLASHAR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0289 182 SMART ring_2 113 154 IPR001841 -
Glsi14g0289 182 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Glsi14g0289 182 SUPERFAMILY RING/U-box 112 160 - -
Glsi14g0289 182 PANTHER RING-H2 FINGER PROTEIN ATL67 7 181 IPR044289 GO:0016567|GO:0016740
Glsi14g0289 182 CDD RING-H2_EL5-like 113 155 - -
Glsi14g0289 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 160 IPR013083 -
Glsi14g0289 182 Pfam Ring finger domain 113 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0289 Glsi-ChrGlsi14 3690834 3691382 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0289 11 182 C3H Transcription Factor Family AT5G07040 59.884 6.09e-67 200