LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi14g0261	ATGTCCACAGAGCATCAGAGGATAGTGGTGATCCACGATGCATCAACACATGTTAGTACAAGTGCAATAAAAAAAGCCCTGAGACAGTTATCTCTTAAGCCTGGAGATGAACTTACACTTCTTGCAATTGTTGTGAACCACAAAATCAAGTTGGATCCCAGTTCATTTGTTGCAACAGACCAGAAAATTTCTGAGGAAGAGCTTGCCAAGAAAAAGGAGGAATATCATAAGAGATCACATATCATGAAACTCTCGAAGTACTGTCAAAAAAAAAATATTGTATTCCACATAGAAGTGCTTGCAGGCCCTTCTCCAGAGGTTGCTTCAAATGCTGCCAAAGATTTTAGGGCAACATGGTTGATACTTGATAGACAGATGAACAAAGACAAGAGGCACTTCATGGACACTCTCCCTTGTGGTATGTATAGGATAAGGAGTCACAATTCCATTGAAAGGTTAAGAAAGCCAAAAATAGCAGAGGGCACCAAATCACTTGATGAAAGCCCAGATCATGTAAGATATGTAGAAATGATACCAGGAAGTTCAGAGGAAGGGTTTTCTGCTAAGGGATCTAAATCATTATCAAGTGAAAAGCTCAAGGCAATTAGAGTTTCAAGTCTTCGAAATACCGAATCCTCAACTTCAGGCGCGCAGCATCACCTTCTAGAATACAAAGAGGGACAACATTCTCCGAAGATTAAACAAGAAACAGCAGGGCAGCATTCGCTACTTTACATTTCTGAGAGGAAGGAGATAGGCCAAACAGAAGTACATCGCATAGAGAGGCCAGTTAACTACCTGGAGCAACTCGGAAGCAATATTAAGGAAGCATCTCAAGTGGAGAATGAATTTACAAACCCACTTTGTTCTGTGTGCAAGAACAGAAGACCGAAAGTTGGATGGAAGAGAGACTACAGTTATGCAGAGCTCCACGCAGCCACACAGGGATTTTCCCAGAAGAATTTTCTGTCTGAAGGCGGGTTTGGCTCAGTCTACAAAGGGCAGCTAGATGGAATGACAATTGCTGTTAAGCAACATAAATGTGCAAGCCTCCAAGGAGAGAAGGAGTTCAAGTCAGAAGTCAATCTACTTAGCAAAGCAAGACATGATAATGTGCTCATACTGCTAGGGTCATGCTTAGAAGGAAATAATAGGCTTCTTGTTTATGAATATGTATGCAACGGCTCGCTGGACCAACAGCTATCACAACACACTCGAGCTCCTCTTAGTTGGGAAGATAGGATTAAAGTGGCTGTTGGATCTGCCAAAGGCTTACTATACTTGCATGAGAATAACATCATACACAGGGATGTGAGAACAAGTAATATCCTCATAACACATGATCATCAACCTCTGCTGGGAGACTTTGGTTTGGCAAGAAGACAAAATCCAGACTCGATACACTCGACAGAGGTTGTAGGGACTCTGGGGTATTTGGCACCAGAATATGCAGAATATGGCATAGTGTCAACCAAGATAGATGTCTATTCTTTTGGGGTGGTCCTACTACAGCTAATAACTGGAATGAGGACTACAGACCAAAGACTAGGAGGAAGAAGTCTCGTGGGATGGGCAAGGCCACTATTAAGAGAGAGGAATTATCCAGACCTAATTGACCACAGGATCATGAAATCTCATGATTTCCATCAACTATTTTGGATGATTCGAATAGCAGAAAAATGTCTAAGCAGGGACCCTCGGAAGAGATTAAGTATGGTTGTGGTGGTTAATGCTTTGAATCAGATAGTGGAGGGCCGCACATGTGGAATCATAGTGAGAGATTGCTCCCCTGTAAGGTCGGATTCATTCTATAGCACATCAGACACTGGTGACTCATCGGAAGATGACCTGCAGGGATCCTACAGGTCAGAAGGTGAGCTAGAAAGTCCCAGCAAAGAGTCCTCATCAAGTAGTAGCTTGAATCAGATGATTTTAGGACTTCCAATCCCACCATCCCCTCCAATGAAGGCCACTTCTTCAAGTATGTCAAATACAGTGAAGGTGCTTGATGATTCAACTATCACCACTGAAGAACAGAATGAAAGAAATCAAGGGCTACCCAATGCAGAGAATGAGAAGTAA	2082	0.4251	MSTEHQRIVVIHDASTHVSTSAIKKALRQLSLKPGDELTLLAIVVNHKIKLDPSSFVATDQKISEEELAKKKEEYHKRSHIMKLSKYCQKKNIVFHIEVLAGPSPEVASNAAKDFRATWLILDRQMNKDKRHFMDTLPCGMYRIRSHNSIERLRKPKIAEGTKSLDESPDHVRYVEMIPGSSEEGFSAKGSKSLSSEKLKAIRVSSLRNTESSTSGAQHHLLEYKEGQHSPKIKQETAGQHSLLYISERKEIGQTEVHRIERPVNYLEQLGSNIKEASQVENEFTNPLCSVCKNRRPKVGWKRDYSYAELHAATQGFSQKNFLSEGGFGSVYKGQLDGMTIAVKQHKCASLQGEKEFKSEVNLLSKARHDNVLILLGSCLEGNNRLLVYEYVCNGSLDQQLSQHTRAPLSWEDRIKVAVGSAKGLLYLHENNIIHRDVRTSNILITHDHQPLLGDFGLARRQNPDSIHSTEVVGTLGYLAPEYAEYGIVSTKIDVYSFGVVLLQLITGMRTTDQRLGGRSLVGWARPLLRERNYPDLIDHRIMKSHDFHQLFWMIRIAEKCLSRDPRKRLSMVVVVNALNQIVEGRTCGIIVRDCSPVRSDSFYSTSDTGDSSEDDLQGSYRSEGELESPSKESSSSSSLNQMILGLPIPPSPPMKATSSSMSNTVKVLDDSTITTEEQNERNQGLPNAENEK	693

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi14g0261	693	ProSiteProfiles	Protein kinase domain profile.	317	583	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi14g0261	693	FunFam	Proline-rich receptor-like protein kinase PERK8	279	391	-	-
	Glsi14g0261	693	FunFam	receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1	392	594	-	-
	Glsi14g0261	693	SMART	tyrkin_6	317	579	IPR020635	GO:0004713\|GO:0006468
	Glsi14g0261	693	ProSitePatterns	Tyrosine protein kinases specific active-site signature.	433	445	IPR008266	GO:0004672\|GO:0006468
	Glsi14g0261	693	Gene3D	Phosphorylase Kinase; domain 1	290	391	-	-
	Glsi14g0261	693	PANTHER	OS01G0253100 PROTEIN	209	583	-	-
	Glsi14g0261	693	SUPERFAMILY	Protein kinase-like (PK-like)	302	599	IPR011009	-
	Glsi14g0261	693	MobiDBLite	consensus disorder prediction	602	693	-	-
	Glsi14g0261	693	MobiDBLite	consensus disorder prediction	630	645	-	-
	Glsi14g0261	693	Pfam	Protein tyrosine and serine/threonine kinase	320	577	IPR001245	GO:0004672\|GO:0006468
	Glsi14g0261	693	Gene3D	Transferase(Phosphotransferase) domain 1	392	590	-	-
	Glsi14g0261	693	MobiDBLite	consensus disorder prediction	615	629	-	-
	Glsi14g0261	693	MobiDBLite	consensus disorder prediction	656	693	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi14g0261	Glsi-ChrGlsi14	3416337	3423787	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi14g0261	305	580	Trihelix Transcription Factor Family	AT1G70460	47.038	2.24e-76	257

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-2	Glsi14g0261		PK_Tyr_Ser-Thr	2.4e-45	CL0016