Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0260 ATGAGCCATACTGAACAAAAAACCCAGCAAAGCAAGGTAGAAGTACAATTTGAAAACTGTGTTTGCCCAGTGTGCAAGAACAGAAGGCCAAGAATTGGGTGGAAGAGGGACTTTTCATATGCGGAGCTTCACGCCGCCACAGAGGGCTTTTCTGCAAAGAACTTTCTGTCAGAAGGAGGGTTTGGTTCTGTGTACAAAGGGGAGCTTCAGGGGTTGAAGATTGCTGTGAAGCAGCAAAACAGAAATGCAAGCCTCCAAGGGGAGACGGAATTCAAGTGTGAGGTTGATGCACTGACCAAAGCTAGGCATGAGAATGTGATATTGATGCTGGGATCATGCTCAGAAGGAAATCATAGGCTTCTTGTTTATGAATATGTCTGCAATGGTTCACTCAACCAACATTTATCAGAATACTGTCGAAAACCTCTAAGTTGGCAAGACAGGATGAAAGTAGCAATTGGAGCTGCAAAGGGGTTGCTCTACTTGCATGAGAACAATATCATACACAGAGACATGACACCGAACAACATCCTCGTTACACATGACTATGAAACGTTGGTAAATGATGCACAAATTAATGGAGATTTTGGCCTGGCAAGAAGTCTACCTGAAGAATCCTCATACTCAACAGATTGTGTTGGAAATTTGGGGTATTTGGCACCGGAATATGCAGAATTTGGCAAAGTGTCAACAAAGACTGATGTGTATTCTTATGGGGTGGTTCTATTGCAGCTAGTAACTGGAATGAGGACAACAGACAAAAGACTTGGAGAAACAAGTCTTGTGGCATGGGCAAGACCACTATTGAAAGAAAGGAAATACCAATCTCTGATTGATAAAAGGATAATGAAATCCCACGATTGCCATCAATTCTTTTGGATGACTCGTCTTGCTGAGAAGTGTCTCACCAGAGATCCTCAGAAGCGATTGACTATGGCTACAGTGGTGAATGCATTAAGTCATATGGTGGAAGGCTGCACATGCAGGGTGAGGGATTGTCAACCTGCACAGTTATACTCATCCCACGTCAATTCAGGCTCTCCTGAATCAAAAGGCAAGAAACAGGGCTCTTCTGAATCACAAATGGAAGTTTTGCCAGAGAATCGCATCTATTATAAACCATCAAATTCAATCTGCAAACACAAGCAAAGAAATGTAAGACTTGTTCCATTAAGGATAGATGCTATGCAACATTTCAACTTCAATGTTATTTTACAAATCACTCTAAAACTTGCAAAGACATTTAGTGCAACCAAGAGTTTCATGCCAGCATACAATACATGCAAAGAATTCATAAAGCCAGAAGCAAGGCATAGGTCCCTTACCCAAGCATTCAATACCATATATCACCCCCATGCTAGATCTTTCTGA 1371 0.4187 MSHTEQKTQQSKVEVQFENCVCPVCKNRRPRIGWKRDFSYAELHAATEGFSAKNFLSEGGFGSVYKGELQGLKIAVKQQNRNASLQGETEFKCEVDALTKARHENVILMLGSCSEGNHRLLVYEYVCNGSLNQHLSEYCRKPLSWQDRMKVAIGAAKGLLYLHENNIIHRDMTPNNILVTHDYETLVNDAQINGDFGLARSLPEESSYSTDCVGNLGYLAPEYAEFGKVSTKTDVYSYGVVLLQLVTGMRTTDKRLGETSLVAWARPLLKERKYQSLIDKRIMKSHDCHQFFWMTRLAEKCLTRDPQKRLTMATVVNALSHMVEGCTCRVRDCQPAQLYSSHVNSGSPESKGKKQGSSESQMEVLPENRIYYKPSNSICKHKQRNVRLVPLRIDAMQHFNFNVILQITLKLAKTFSATKSFMPAYNTCKEFIKPEARHRSLTQAFNTIYHPHARSF 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0260 456 FunFam Proline-rich receptor-like protein kinase PERK8 12 125 - -
Glsi14g0260 456 Gene3D Phosphorylase Kinase; domain 1 22 125 - -
Glsi14g0260 456 Gene3D Transferase(Phosphotransferase) domain 1 126 334 - -
Glsi14g0260 456 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 355 - -
Glsi14g0260 456 ProSiteProfiles Protein kinase domain profile. 50 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g0260 456 ProSitePatterns Tyrosine protein kinases specific active-site signature. 167 179 IPR008266 GO:0004672|GO:0006468
Glsi14g0260 456 SUPERFAMILY Protein kinase-like (PK-like) 34 324 IPR011009 -
Glsi14g0260 456 MobiDBLite consensus disorder prediction 340 361 - -
Glsi14g0260 456 Pfam Protein tyrosine and serine/threonine kinase 53 319 IPR001245 GO:0004672|GO:0006468
Glsi14g0260 456 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 126 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0260 Glsi-ChrGlsi14 3401927 3411806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0260 38 345 Trihelix Transcription Factor Family AT5G38560 43.653 4.09e-74 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Glsi14g0260 PK_Tyr_Ser-Thr 1.5e-46 CL0016