LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi14g0259	ATGATAAATGAGATTGAAGATGAGGTGCTCCCCATCGATCAGACTGGGATGATGATTAATGATGAGGGTAATGGAGGAAGTGGCAGTGGAGTTCTTCTGAAGAAAGGGCCATGGACATCCGCTGAAGATGCTATTTTGGTGGACTATGTTAAGAAGCATGGGGAAGGGAACTGGAATGCTGTTCAGAAGCACTCAGGCCTGTCCCGTTGCGGCAAAAGCTGTCGACTGCGGTGGGCAAATCACCTAAGGCCAAATTTAAAGAAAGGGGCATTTACTGCAGAAGAAGAGCAGTTGATTGCTGAACTACATGCCAAGATGGGAAACAAATGGGCACGCATGGCGGCACATTTGCCTGGTCGTACTGATAATGAGATAAAGAACTACTGGAATACCCGGATAAAGAGACGTCAACGGGCTGGCTTACCACTTTATCCTCCTGATGTGTGTTTGCAAGCATTGCAAGAGAGTCAGCATGGCCAAAGTACAGTTGGAAATAATGGTGATAGAGGACATCATGATTTTCTTCAGGAAAACAATTATGAGGTACATGATACTATATTTGACAGTCTGAAGACTAATCAGGGAATCTTACCCTATGTGCCGGAGCTTCCTGACATTTCTGCTAATAGCATTCTGCTGAAAGGTCTTGGTTCTTCTCAGTATTGTAATCTTCTTCCAACAACATTACCTTATCATAAGCGCCTTCAAGAGTCAATAATGCCATTTCTTGGTTCAAGTGGTATGAACAGAAATGAGTTTTATCCTTTTGACCATATTCAGGATAATACTTCTGATAAGATTGCGCAATCATTTGGAATGCATTCTCCCCTTGATCCTGGTCCCTCGTCACAGAACTCACTATGTTACAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCGACTTCTGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACTGATTTAGGTAGCTGGGGTACATCTCCCCCGCCTCCTTTGCTTGAATCAGTTGATGTTTTCATTCAGACTCCTCCACCAACTAGTGCACTGGAGTCAGATTCTTCTTCACCATATAATAGTGGCCTGCTGGATGCTTTACTTTATCAGGCTAAGACTCTGAGCAGTTCAAAGAACCATTATTCTGACAAGAGTTCGAATTCATCTACTGCAATTGCTGGTGATAGAGCTGACAGTACCCCTTTGAACATGTACGAGACAGAATGTGGAGACTATGCTGACTCTGTTTCTCCATTTGGTGCAACTTCAGTCTTGAATGATTGTCTTGCTGTTTGTGCTGAGGGAAATTCATTAGATGAACAGCCACCTGCACAGACCTTTAGTGGCAACATTGTGAAATCAGAATCTGTTTACCAGGTTGTGGACCCTAAAAGTGAAAGCCAAATCGTGTCCATGTGGAATATCACTCGACCTGATGCCTTGCTTGCTTCAGATTGGCTTGAGCAGGGTTCTGGGTGTGGCAAGAACCACTCTGTCATGACTGATGCCATAGCAACCCTCCTTGGTGATGATTTAGCCACTGACTACAAGCATACGACTCCAGGAACTTCTACATCAAGTCAAGTATGGGGGTTTGATTCTTGTGCATGGAATAACATGCCTGCTGTATGTCAAATGTCTGATTTTCCCTGA	1650	0.44	MINEIEDEVLPIDQTGMMINDEGNGGSGSGVLLKKGPWTSAEDAILVDYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEEQLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPDVCLQALQESQHGQSTVGNNGDRGHHDFLQENNYEVHDTIFDSLKTNQGILPYVPELPDISANSILLKGLGSSQYCNLLPTTLPYHKRLQESIMPFLGSSGMNRNEFYPFDHIQDNTSDKIAQSFGMHSPLDPGPSSQNSLCYSHSLSNGNSSTSKPTSEAVKLELPSLQYPETDLGSWGTSPPPPLLESVDVFIQTPPPTSALESDSSSPYNSGLLDALLYQAKTLSSSKNHYSDKSSNSSTAIAGDRADSTPLNMYETECGDYADSVSPFGATSVLNDCLAVCAEGNSLDEQPPAQTFSGNIVKSESVYQVVDPKSESQIVSMWNITRPDALLASDWLEQGSGCGKNHSVMTDAIATLLGDDLATDYKHTTPGTSTSSQVWGFDSCAWNNMPAVCQMSDFP	549

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi14g0259	549	SMART	sant	87	135	IPR001005	-
	Glsi14g0259	549	SMART	sant	34	84	IPR001005	-
	Glsi14g0259	549	FunFam	MYB-related transcription factor	34	87	-	-
	Glsi14g0259	549	MobiDBLite	consensus disorder prediction	269	307	-	-
	Glsi14g0259	549	Gene3D	-	34	87	-	-
	Glsi14g0259	549	SUPERFAMILY	Homeodomain-like	34	129	IPR009057	-
	Glsi14g0259	549	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	83	137	IPR017930	-
	Glsi14g0259	549	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	33	82	IPR017930	-
	Glsi14g0259	549	PANTHER	TRANSCRIPTION FACTOR MYB33-RELATED	21	523	-	-
	Glsi14g0259	549	ProSiteProfiles	Myb-like domain profile.	83	133	IPR001005	-
	Glsi14g0259	549	MobiDBLite	consensus disorder prediction	377	396	-	-
	Glsi14g0259	549	Gene3D	-	90	136	-	-
	Glsi14g0259	549	FunFam	Transcription factor GAMYB	90	136	-	-
	Glsi14g0259	549	CDD	SANT	37	82	IPR001005	-
	Glsi14g0259	549	ProSiteProfiles	Myb-like domain profile.	33	82	IPR001005	-
	Glsi14g0259	549	MobiDBLite	consensus disorder prediction	377	395	-	-
	Glsi14g0259	549	CDD	SANT	90	131	IPR001005	-
	Glsi14g0259	549	Pfam	Myb-like DNA-binding domain	35	82	IPR001005	-
	Glsi14g0259	549	Pfam	Myb-like DNA-binding domain	88	131	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi14g0259	Glsi-ChrGlsi14	3398131	3401843	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi14g0259	23	542	MYB Transcription Factor Family	AT3G11440	46.468	2.21e-139	413

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Glsi14g0259		Myb_DNA-binding	5.1e-15	CL0123