Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0236 ATGGAGATACACGAAGAAGCATCAAACCCGGGAACCACAATTTTTCTCCTTAACGAGGATCGTGTGTCAAGCTTTTATTCTGGGTTTTCTGCGGTGTCTGATACTTCTGTTTATGGTCTTGGGTTGTTCTGGGCCATTGCAAAGTGGATCTCTTCCATGTTTTCTGTTGTCACCATCCCTGCACATGTTGTTCCTCGTATAGCAGAATCAGGGAAAATTAATGAGCCAGAATTCAGCAAAAAAGTTCATGACCCAATGAAAAAAATGTCAAATCCAAAACGTTTGCCTATGGCCAGGCGTGGTATTGGATCTAAGGGCCAAAAGATACTGCTGTTGACTAACCATTTTAGAGTTGGCGTGGGCAAGAAAGATGGTTACTTCTATCATTATAGTGTTGCCCTGTTTTATGAAGATGGACACCCGGTTGAAGCTAGGGGTATTGGCAGGAGAGTCATAGACAAAGTGTATGACACATATGCAACTGAACTACAAAGCAAGGACTTCGCATATGATGGAGAGAAGAGTTTGTTCACTCTTGGTTCTCTTCCACATAACAAGCTTGAGTTCACTGTCGTGCTGGATGAAATTTCATCAAAGAGGGTTGGAAGAAATGGAAGCCCCGACAGCCCTGATGAAGGTGGTATCAAGAGAATGAGGCGTCAATCTCAGTCCAAAACCTACAAGGTAGAGATTAGTTATGCTGCTAAAATCCCTATACAAGCAATTGTGGATGCATTACGTGGCCAAGAATCTGAGCACTTTCAAGAAGCTTTAAGGGTTCTGGATATCATACTAAGACAGCATGCAGCGAAGCAGGGCTGTCTACTTGTTCTTCAATCTTTCTTCCATGACAATCCAAGAAATTATACAGACATAGGAGGTGGAGTTCAAGGTTGCCGTGGTTTTCATTCAAGCTTCCGAGCCACTCAAGGGGGTTTGTCACTTAACATTGATGTGTCAACAACAATGCTTTTAAAACCTGGCCCAGTGGTGGACTTCCTTTGCTTGAATCAAAACGTTAAGCATCCTTGCTCAATTGATTGGAACAAGGCTAAAAGGATGCTGAAAAACCTAAGAATCAAGGCAAACAATATTGAGTACAAAATCACTGGATTAAGTGATAGACCCTGCAGAGATCAGACATTTTCATTAAGACAAGGAAGGGATGCATATGGTGAAGTGCAATCAATTGAAGTAACAGTTAGTGATTATTTTGAACATCATAAGCACATAAAATTGCGCTATTCAGCTGATTTTCCATGCATCAATGTTGGCAAACCAAAGCGTCCATCTTATTTTCCAATTGAGCTCTGCACCTTGGTCTCATTGCAAAGGTACACCAAGGCACTGACCAATTTACAAAGGGCTCAGCTTGTGGAGAAGTCAAGGCAAAAGCCCCATGAAAGAAAGGCAGCTTTAGCTGATTCACTAAGAAACAGCAGATATGGTAACGAGGCTATGCTTCGCTCTTCTGGAATCACCATTGATTCTGAGTTTACTCAAGTTGATGGCCGTGTTCTGCCAGCCCCAAGGCTTAGATTTGGAAATGGGGAAGACTTTTGTCCCCGAAATGGGAGGTGGAATTTCAACAATAAGAAACTAGTTGAACCTGTGAAGATTGAGCGTTGGGCTGTTGTAAACTTCTCAGCTCGTTGTGATATTCGTCACTTGTGCAATGGCCTGCAGAAATGTGCAGGAATGAAGGGAATTTACTTGAGTTCTCCATTTGATGTGTTTGAAGAGGATCCGCGTATGATACGTGAGCCAGCACCTCTCAGAGTCAAGAGAATGTATGAAACTGTGAAGTCTAAGTTGCCTGGGTTTCCCCAACTTCTATTATGTATTCTTCCAGAGAGGAAGAATTCTGACATTTATGGTCCTTGGAAAAGAAGAAATCTTGCTGAGGAAGGGGTTGTCACACAATGTATTGCACCAAGTAACAAATTGAGCGATCAGTACCTTACTAATGTTCTCTTGAAAATTAATGCCAAGCTTGGTGGGATGAACTCCTTTCTGTCAGTAGAGCATGCACCTTCTATACCTCTAGTTTCTAAGGTGCCTACCTTAATTCTTGGTATGGATGTCTCACACGGCTCTCCTGGTCGATTAGATATGCCATCTATTGCTGCGGTTGTCAGCTCGAGGTGTTGGCCTTTAATTTCACGTTATAGAGCTTCAGTTCGTACACAATCACCAAAAGTTGAGATGATCGCTTCTCTATTCAAGCCTATTTCTGATACTAAGGATGATGGTATTATTAGAGAGCTACTTGTAGACTTCACTGCAACTTCAGGATCAAGGAAGCCTGAACATATTATAATTTTCAGGGATGGAGTGAGTGAATCACAGTTCAATCAAGTCTTAAACATTGAGTTAGATCAAATCATTCGGGCATGCCAACATATTGATGAAAATTGGTCTCCGAAGTACACTTTGATTGTTGCCCAAAAGAATCATCATACTAAGTTCTTTCAGGTTAATGCTCAAGAAAATGTTCCACCTGGAACTGTCATTGATAATAACATCTGTCATCCAAAGAATAATGACTTCTACATGTGTGCTCATGCTGGGATGATTGGGACAACTAGGCCTACTCATTACCAAGTTTTACATGATGAGATTGGGTTCACAGCAGATGGCTTGCAAGAACTTGTGCATTCTCTATCTTATGTGTATCAGAGGAGCACAACAGCCATATCAGTAGTGGCCCCCATTTGCTATGCCCACTTGGCAGCTGCTCAGATGGGGCAATTTGTGAAGTTTGATGAATTGTCCGAGAGTTCTTCTAGCCACGGTGGAGTCACATCGGCCGGTGCAGTTCCAGTGCCAGAGTTGCCCCGTCTTCATGAACTTGTCAGCAACTCAATGTTCTTCTGTTGA 2880 0.4233 MEIHEEASNPGTTIFLLNEDRVSSFYSGFSAVSDTSVYGLGLFWAIAKWISSMFSVVTIPAHVVPRIAESGKINEPEFSKKVHDPMKKMSNPKRLPMARRGIGSKGQKILLLTNHFRVGVGKKDGYFYHYSVALFYEDGHPVEARGIGRRVIDKVYDTYATELQSKDFAYDGEKSLFTLGSLPHNKLEFTVVLDEISSKRVGRNGSPDSPDEGGIKRMRRQSQSKTYKVEISYAAKIPIQAIVDALRGQESEHFQEALRVLDIILRQHAAKQGCLLVLQSFFHDNPRNYTDIGGGVQGCRGFHSSFRATQGGLSLNIDVSTTMLLKPGPVVDFLCLNQNVKHPCSIDWNKAKRMLKNLRIKANNIEYKITGLSDRPCRDQTFSLRQGRDAYGEVQSIEVTVSDYFEHHKHIKLRYSADFPCINVGKPKRPSYFPIELCTLVSLQRYTKALTNLQRAQLVEKSRQKPHERKAALADSLRNSRYGNEAMLRSSGITIDSEFTQVDGRVLPAPRLRFGNGEDFCPRNGRWNFNNKKLVEPVKIERWAVVNFSARCDIRHLCNGLQKCAGMKGIYLSSPFDVFEEDPRMIREPAPLRVKRMYETVKSKLPGFPQLLLCILPERKNSDIYGPWKRRNLAEEGVVTQCIAPSNKLSDQYLTNVLLKINAKLGGMNSFLSVEHAPSIPLVSKVPTLILGMDVSHGSPGRLDMPSIAAVVSSRCWPLISRYRASVRTQSPKVEMIASLFKPISDTKDDGIIRELLVDFTATSGSRKPEHIIIFRDGVSESQFNQVLNIELDQIIRACQHIDENWSPKYTLIVAQKNHHTKFFQVNAQENVPPGTVIDNNICHPKNNDFYMCAHAGMIGTTRPTHYQVLHDEIGFTADGLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQMGQFVKFDELSESSSSHGGVTSAGAVPVPELPRLHELVSNSMFFC 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0236 959 Gene3D - 506 673 - -
Glsi14g0236 959 Pfam N-terminal domain of argonaute 107 265 IPR032474 -
Glsi14g0236 959 CDD Piwi_ago-like 492 914 IPR045246 -
Glsi14g0236 959 FunFam Protein argonaute 3 680 959 - -
Glsi14g0236 959 Pfam PAZ domain 332 458 IPR003100 GO:0005515
Glsi14g0236 959 SMART DUF1785_2 275 327 IPR014811 -
Glsi14g0236 959 Gene3D - 679 959 IPR036397 GO:0003676
Glsi14g0236 959 CDD PAZ_argonaute_like 327 441 - -
Glsi14g0236 959 Gene3D paz domain 321 446 - -
Glsi14g0236 959 ProSiteProfiles PAZ domain profile. 367 442 IPR003100 GO:0005515
Glsi14g0236 959 ProSiteProfiles Piwi domain profile. 611 920 IPR003165 GO:0003676
Glsi14g0236 959 SUPERFAMILY Ribonuclease H-like 598 918 IPR012337 -
Glsi14g0236 959 SUPERFAMILY PAZ domain 322 482 IPR036085 GO:0005515
Glsi14g0236 959 Pfam Argonaute linker 1 domain 278 324 IPR014811 -
Glsi14g0236 959 FunFam Protein argonaute 7 322 446 - -
Glsi14g0236 959 Pfam Argonaute linker 2 domain 468 514 IPR032472 -
Glsi14g0236 959 MobiDBLite consensus disorder prediction 200 222 - -
Glsi14g0236 959 Pfam Piwi domain 612 920 IPR003165 GO:0003676
Glsi14g0236 959 SMART Piwi_a_2 611 920 IPR003165 GO:0003676
Glsi14g0236 959 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 89 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0236 Glsi-ChrGlsi14 3026721 3039766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0236 99 959 Eukaryotic Initiation Factors Gene Family AT5G43810 35.818 2.26e-167 513