Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0230 ATGGGACAGGAAACAAGAAGGCTATCAGATGAATATGAAGTTTCAGAGATCTTAGGAAGAGGAGGATTCTCTGTTGTGAGAAAAGGTATTAAGAAATCAAGCAGTGATGAGAAAACCCAGGTAGCCATCAAAACACTCAGAAGGATAGGTACTTCTAATCCTCCTGGACTGTCAAGAACCAACAGAGGCGAAAAGGGCATAGCTCCCACGGGGTTCCCAACTTGGAGACAGGTTTCAATATCAGATGCCTTGCTCACCAATGAGATCCTGGTCATGAGAAAGATAGTGGAGAAAGTTTCACCCCATCCAAATGTGATTGACCTCTATGATGTTTATGAGGACTCAAATGGGGTTCATCTTGTACTGGAGCTTTGTTCTGGTGGCGAACTGTTTGATCGGATTGTGGCGCAGGAGAGGTATACCGAGGCAGAAGCTGCAGCAGTGATTCATCAGATTGCAGGAGGACTAGAGGCTCTTCACAGAGCTAATATTGTTCACAGGGACTTGAAGCCTGAGAACTGCTTGTTCCTGGACAGTAAAAAGAATTCTGCTCTGAAGATCATGGACTTTGGGTTGAGCTCTGTGGAAGAATTTACTGACCCAGTTGTTGGTTTGTTTGGATCCATTGATTATGTTTCACCAGAAGCTCTTTCTCAAGGAAAAATAACTACTAAGAGTGACATGTGGTCCCTGGGAATAATTCTGTATATCTTACTCTCTGGGTATCCGCCTTTTCTTGCTCAGTCCAATCACCAAAAGCAACAAATGATAATGACTGGGAGTTTCAGCTATTATGAGAAAACTTGGAAGGGCATTTCCTCATCAGCAAAGCAATTGATTTCAAGCCTCCTGACAGTTGATCCTAACAGGAGACCTAGTGCTCAAGAGCTTCTCAGTCATCCATGGGTCAGAGGTGACATAGCCAAAGATGATCAAATGGACCCTGAGATTGTTGCAAGGTTGCAAAGTTTTAATGCTCGACGCAAGCTCCGTGCAGCAGCAATTGCTAGCGTATGGAGCAGCACAGTGTTCTTGAGAATGAAAAAATTAAGATCCTTGTTGGGATCCCACGACCTCACAGAAGGTGAAATTGAAAATCTCAAGATACATTTCAAGAAGATATGTGCAGACAGAGACAATGCCACTCTCTCTGAATTTGAGGATGTGCTAAAAGCAATGAATATGTCATCACTTATCCCTCTTGCATCTCGTATATTTGACCTATTTGACAACAATCGTGATGGAACAGTTGACATGAGAGAGATACTCTGTGGGTTTTCCAGCCTCAAGAATTCAAAAGGCGATGATGCTCTCCGTCTGTGCTTCCAGATGTATGACACAGATCGATCTGGGTGCATCACTAAGGAAGAAGTAGCATCCATGCTCAGAGCTTTGCCAGATGACTGCCTACCAGCTGATATCACTGAACCAGGCAAGTTGGATGAGATTTTTGATCGAATGGATGCCAACAGCGATGGAAAAGTTACCTTTGATGAATTCAAAGCTGCCATGCAGATAGATAGCTCTCTGCAAGATGTAGTCCTCTCCTCTCTTCGCCCATCATAGGAAGTGGGTAAAGGTAATACACGGACAGTATATCCCACTACTGCTACTGCCTTTTACTCTGGTTTTGAGCTCAAGGCAACCAGAGCAATAGCAACCCACCCCCATCGAGCAGTCCCCGCTGAGCGTCCAAGCTTCCCTTTGACAGCAGGGAAGGTTGGTAGGAATGGAATTGAGGTGGGTACCAATCTAGTTCCTAATTCTGTACCAAGACCAATAGCAAGGATTTCTGTTCTGAAGTCTTTCCTCTCTACAGTGTTCTTTGTAATGGTTAGCTGTTCATATGAGATTAATTATCATGCTTTACACAGAAGTTTTCTTGTTTTTGCCTCAATTAGTAATTGTTGCAATGAAATTCTTTTTATAACAGCTGATAGCTACCATTTCTGGTGGACTGACCTTGGAACACAACTTGCTCGGAATGTTCCTTTCTCTGCAATTTGCTGGTCAACGCTTCAGCCACAACTGGGTGTTGAATACAACATGCTGAAATGTCATAACCCCAAACCCAGTACTATCCTGACCATCTTACAAGGATGCAATAATATCAAAAAGCTTAAAAAGATCCATGCCTGTGTTGTTGTTAGTGGACTCCAACACCATCAGGCTATTTCCAACAAGCTTCTGAACTTTTGTGCTGTCTCAGTTGCTGGTTCCATGGCTTATGCTCAACATCTCTTCCATCACATGGAAAACCCTCCAACTGAAGCATGGAACTCCATTATCAGAGGCTTTGCACAGGGCTCATTGCCTCTCCAAGCACTTCTTTACTACAATGCTATGATTTCTGCTTCAGTTTCGCGGCCTGACACCTATATTTTCTCTTTTGTTCTCAAGGCTTGCGAGAAAATCAAGGATGAAAAGAAATGTAAAGAGGTTCATGGATCTATAATCCGGCGAGGTTATGAGAGAGATGTTATTGTTTGTACTAATCTAATGAGATCATATGCTGGGAATGATATGCTTGAGATCGCACGAAGAGTTTTCAATGATATGTCTGATAGAGATTTGGTTTCTTGGAATTCTATGATATCATGCTACTCTCAAGCAGGTTTTCACCAAGATGCTTTGGCATTGTACTACAAAATGCGAGATAAAAAAGTTGGTCTTGATGGGTTTACACTTGTTGGCTTGGTTGCATCATGTGCTCATATTGGAGCTCTGAATCTTGGGATACAAATGCACAAAATTGCTAGTAAAAAGGGCTTTGTGAAAGACATTTATGTTGTAAATGCTCTCATTGATATGTATGCAAAGTGTGGAAGCTTAGATAGTGCACTTTCTATCTTTAACAAGAGGAAGAAGAAGGATGTTTTTACTTGGAACTCAATGATTGTTGGGTATGGAATTCATGGTCACGGAGATAAAGCAATATCACTTTTTAAGCAGATGTTAATAGCAAGATTCCAGCCAAACTCCATCACATTTGTTGGTTTGTTGTGTGGATGTAGTCACCAAGGCTTAGTTGAGGAGGGCCTTCATTATTTCCAGTTGATGAGCTCTGACTTCAAGCTGAAGCCTGGAGTCAAGCACTATGGGTGCATGGTGGATCTTTTTGGACGAGCAGGAAAACTTGAGAAGGCATTGGAACTTATAGAAACTTCTTTGTATGATTCCCCAGTGCTTTGGCGTACACTACTCAGCTCTTGCAAGATTCATAGAAATGTGACGATTGGAGAAATCGCCATGAAGCATCTGGTCCAAGTTGGGATACCTAATGCCGGGGATTATCTGTTGATGGCTTCATTATATTCTGGAGCTAAGGATATAGATGGAGTTTTACGAATGAGAAAAATGTTGAAAAACCACGGAATAAAGACCACTGTGGGTTGGAGCTGGATCGAGGTGGGTGAGCAAGTTCACAAGTTTGTGGTGAATGATAATTCACACCCTGATTCTTGTGAGATTTATGAAAAACTAAAGGAGATGATCCATCAGGCTACCTTGCTTGGTTATGTAGAAGAGGAGGCTATTGACACAGATCCTAAATTTTCTGCCGAAATGAGTTTGGGTAGTTCATCATCAACTTCTTATCATAGTGAGAGGTTGGCAATTGCTTTTGGATTGGTAAAAACACCAGCAGGATCTTGTTTACGAATAATGAAGAATTTGAGAGTTTGTAGTGATTGTCATACATTTATAAAATTTATTTCAAAAGCTTTTGATCGAGAAATAATTGTCAGGGATCGGGTGAGGTTTCATCACTTCAATAATGGGGCATGTTCCTGTGGAGACTATTGTTCATTCCCCGCAGCCATGGGCCACCATACGCCACAAGGTAAAAGCCAAAGGCCCGACGTGGAAACTCTAGTTTCAGACACTGATCTGCTAAACGCAGAGAGGAGGAGGAGGACGACGACGACCACGGCCACCATCACTAGTACTACTACTTCCTCCAACACTGCTTGTCTTCTCTCTATTAGGGTTTTGCAGTTCCACGTTTCTCTTCCCTTTTTCCATTTCGACCCCTCTTTTCTCTTCCTAATCTATTTCTAG 4059 0.4233 MGQETRRLSDEYEVSEILGRGGFSVVRKGIKKSSSDEKTQVAIKTLRRIGTSNPPGLSRTNRGEKGIAPTGFPTWRQVSISDALLTNEILVMRKIVEKVSPHPNVIDLYDVYEDSNGVHLVLELCSGGELFDRIVAQERYTEAEAAAVIHQIAGGLEALHRANIVHRDLKPENCLFLDSKKNSALKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGIILYILLSGYPPFLAQSNHQKQQMIMTGSFSYYEKTWKGISSSAKQLISSLLTVDPNRRPSAQELLSHPWVRGDIAKDDQMDPEIVARLQSFNARRKLRAAAIASVWSSTVFLRMKKLRSLLGSHDLTEGEIENLKIHFKKICADRDNATLSEFEDVLKAMNMSSLIPLASRIFDLFDNNRDGTVDMREILCGFSSLKNSKGDDALRLCFQMYDTDRSGCITKEEVASMLRALPDDCLPADITEPGKLDEIFDRMDANSDGKVTFDEFKAAMQIDSSLQDVVLSSLRPSXEVGKGNTRTVYPTTATAFYSGFELKATRAIATHPHRAVPAERPSFPLTAGKVGRNGIEVGTNLVPNSVPRPIARISVLKSFLSTVFFVMVSCSYEINYHALHRSFLVFASISNCCNEILFITADSYHFWWTDLGTQLARNVPFSAICWSTLQPQLGVEYNMLKCHNPKPSTILTILQGCNNIKKLKKIHACVVVSGLQHHQAISNKLLNFCAVSVAGSMAYAQHLFHHMENPPTEAWNSIIRGFAQGSLPLQALLYYNAMISASVSRPDTYIFSFVLKACEKIKDEKKCKEVHGSIIRRGYERDVIVCTNLMRSYAGNDMLEIARRVFNDMSDRDLVSWNSMISCYSQAGFHQDALALYYKMRDKKVGLDGFTLVGLVASCAHIGALNLGIQMHKIASKKGFVKDIYVVNALIDMYAKCGSLDSALSIFNKRKKKDVFTWNSMIVGYGIHGHGDKAISLFKQMLIARFQPNSITFVGLLCGCSHQGLVEEGLHYFQLMSSDFKLKPGVKHYGCMVDLFGRAGKLEKALELIETSLYDSPVLWRTLLSSCKIHRNVTIGEIAMKHLVQVGIPNAGDYLLMASLYSGAKDIDGVLRMRKMLKNHGIKTTVGWSWIEVGEQVHKFVVNDNSHPDSCEIYEKLKEMIHQATLLGYVEEEAIDTDPKFSAEMSLGSSSSTSYHSERLAIAFGLVKTPAGSCLRIMKNLRVCSDCHTFIKFISKAFDREIIVRDRVRFHHFNNGACSCGDYCSFPAAMGHHTPQGKSQRPDVETLVSDTDLLNAERRRRTTTTTATITSTTTSSNTACLLSIRVLQFHVSLPFFHFDPSFLFLIYF 1352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0230 1352 NCBIfam pentatricopeptide repeat 960 993 IPR002885 -
Glsi14g0230 1352 NCBIfam pentatricopeptide repeat 995 1028 IPR002885 -
Glsi14g0230 1352 NCBIfam pentatricopeptide repeat 859 891 IPR002885 -
Glsi14g0230 1352 Gene3D Tetratricopeptide repeat domain 909 1025 IPR011990 GO:0005515
Glsi14g0230 1352 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 346 515 - -
Glsi14g0230 1352 ProSiteProfiles Protein kinase domain profile. 12 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g0230 1352 SUPERFAMILY EF-hand 346 510 IPR011992 -
Glsi14g0230 1352 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Glsi14g0230 1352 SMART serkin_6 12 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g0230 1352 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 856 1205 IPR046960 GO:0003723|GO:0009451
Glsi14g0230 1352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Glsi14g0230 1352 SUPERFAMILY Protein kinase-like (PK-like) 5 326 IPR011009 -
Glsi14g0230 1352 CDD EFh 438 505 IPR002048 GO:0005509
Glsi14g0230 1352 CDD STKc_CAMK 12 302 - -
Glsi14g0230 1352 Pfam EF-hand domain pair 436 505 IPR002048 GO:0005509
Glsi14g0230 1352 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 857 891 IPR002885 -
Glsi14g0230 1352 FunFam Pentatricopeptide repeat-containing protein At5g66520 694 854 - -
Glsi14g0230 1352 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 71 129 - -
Glsi14g0230 1352 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Glsi14g0230 1352 Pfam PPR repeat 758 785 IPR002885 -
Glsi14g0230 1352 Pfam PPR repeat 931 953 IPR002885 -
Glsi14g0230 1352 Pfam PPR repeat 1033 1054 IPR002885 -
Glsi14g0230 1352 Pfam PPR repeat 859 888 IPR002885 -
Glsi14g0230 1352 Pfam PPR repeat 829 857 IPR002885 -
Glsi14g0230 1352 Gene3D Transferase(Phosphotransferase) domain 1 131 346 - -
Glsi14g0230 1352 Gene3D Phosphorylase Kinase; domain 1 7 51 - -
Glsi14g0230 1352 Gene3D Phosphorylase Kinase; domain 1 74 130 - -
Glsi14g0230 1352 Pfam E+ motif 1141 1165 IPR046849 -
Glsi14g0230 1352 Pfam EF hand 405 421 IPR002048 GO:0005509
Glsi14g0230 1352 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Glsi14g0230 1352 SMART efh_1 479 507 IPR002048 GO:0005509
Glsi14g0230 1352 SMART efh_1 401 429 IPR002048 GO:0005509
Glsi14g0230 1352 SMART efh_1 437 465 IPR002048 GO:0005509
Glsi14g0230 1352 Gene3D Tetratricopeptide repeat domain 811 908 IPR011990 GO:0005515
Glsi14g0230 1352 Pfam Protein kinase domain 93 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g0230 1352 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 958 992 IPR002885 -
Glsi14g0230 1352 Gene3D - 347 514 - -
Glsi14g0230 1352 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Glsi14g0230 1352 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 130 320 - -
Glsi14g0230 1352 Pfam E motif 1074 1136 IPR046848 -
Glsi14g0230 1352 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 929 1154 - -
Glsi14g0230 1352 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 927 957 IPR002885 -
Glsi14g0230 1352 ProSiteProfiles EF-hand calcium-binding domain profile. 475 510 IPR002048 GO:0005509
Glsi14g0230 1352 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 isoform A 3 55 - -
Glsi14g0230 1352 ProSitePatterns Protein kinases ATP-binding region signature. 18 44 IPR017441 GO:0005524
Glsi14g0230 1352 Pfam PPR repeat family 957 1005 IPR002885 -
Glsi14g0230 1352 ProSitePatterns EF-hand calcium-binding domain. 488 500 IPR018247 -
Glsi14g0230 1352 Gene3D Tetratricopeptide repeat domain 681 810 IPR011990 GO:0005515
Glsi14g0230 1352 Pfam DYW family of nucleic acid deaminases 1199 1267 IPR032867 GO:0008270
Glsi14g0230 1352 PRINTS Recoverin family signature 429 448 - -
Glsi14g0230 1352 PRINTS Recoverin family signature 495 515 - -
Glsi14g0230 1352 PRINTS Recoverin family signature 405 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0230 Glsi-ChrGlsi14 2980517 2996704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0230 693 1267 Glycoside Hydrolase AT3G49170 33.563 2.55e-116 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Glsi14g0230 Pkinase 6.9e-57 CL0016