Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0225 ATGTTTATCTCTTTCTCAACCCAAAAAGTAGAGAGAGGGTTCATGGCACTGATCATTGTGGTTCTGATTCTACTCCAAAGCACCACTTGCCATTCCCATTGCACATCTTCCTGCGGCAATCTCCGAAACATAAGCCGCCCATTTCGAGTAAAGGGTGACCCAAAAAAGTGTGGCGGCGAGAGCTATGAGATAGCTTGCGAGAACAACGTGGCAACGATGTCTGTGCGTTCAGGCAGATATTATGTGCAAGCAATTAATTACAGCGAGGGAACAGTCCGATTGGTGGATCCTGGTGTTGACCCAAACAATTGCTCCTCCACTCCTCTTTATTTCCTTTCGCGGTTCAACTTCACTTCTGATTATGCGTGGTACTATCAATCTTCACTGGAGGTAATTTATTTGACTTGTGCTGAACCAGTGAAAGATCCTTTGTATGTGAGCACTGCTCCATGCACCGGGGAGCATCATCAGGGAGCAGCCTATAGTTATGCAGTAGTTGTTGTTGACTATTTGACTGCCAAGGATATAAGAGTTGGGTGCCAAGTGAAGTTGGTTGTTTTGACAGATTGGAAGGACTGGGGACTCAACTATTCCTATTCTGACTTTCAAGTACCCAATTATTCCTATGCTGACATTCACAGACACTTGGTACATGGATTCGAGCTTTCATGGAGTTCATGTGAATATTACGATGAAGTAACATTTCACAAGTGCGATTTACTTAGTTGGCCATCCCTTCTCATTTCCGACCGCTTCGTTTACGTCAAACATTTTCTCAGATTACTTCCGTCAGGGCCGGTGGTACTTCATGCACTAAAAGTAACTCTGGGGGCACCCTGTGTCATCATTCTTTTGTTCCGTAAATGGAGAAAGAGGCACCTGTCCATGTATGACAGTATCGAAGAATTTCTACAAAGTAACAGTAGCCTGATGCCAATAAGGTATTCCTACAAGGAAATAAGGAATATGACTGAAGGGTTCAAGGACAAATTGGGTGAAGGCGGCTTTGGTACTGTTTTCAAAGGCAAGCTTCGAAGTAGATCTCTGGTAGCAGTGAAGATGCTGAGTAACTCCAAAGCCAATGGCCAAGATTTCATGAGTGAGATTGGCACAATTGGAAGAATTCATCATGTCAACGTAGTGCGGCTTATAGGGTACTGTGTTGAAGGGTCAAAGTGTGCTCTTGTGTATGAATTCATGTCCAATGGTTCTCTTGACAAATACATTTTCTCCGAAGAAGAAGGTGGTTTAGCCTTGAGTTTGAAGAAGCTCTATGAGATTTCCATTGGAGTGGCTCGTGGGATTGCCTATTTACATCAGGGATGTGACATGCAGATTCTGCATTTTGATGTCAAACCTCACAACATTCTGCTTGATGAGAACTTTACACCCAAGGTATCAGACTTTGGACTTGCAAAGCTTTATCCTATAGATGAAAGCATCGTGCCACTGACTGCAGCAAGAGGAACCATAGGGTACATGGCTCCAGAATTATTCTACAAGAACATTGGAGGTGTTTCCTACAAAGCTGACGTGTATAGTTTTGGAATGCTGTTACTCGAAATGGCAGGAAGGAGGAAGAAGTTGAACCCATATGCAGAAAATTCGAGCCAAATTTATTTCCCTTCTTGGGTTTATGATCAGTTCATAAGGGGAAAAGAGATCATGGAGATCACAGATGCCAATGAGGAGGAAAGGAAACTTGTAAAGAAAATGATCACAGTGGCCTTCTGGTGCATACAGATGAAGCCAAGCGTCCGTCCAACCATGAAGAAAGTGGTGGAGATGCTTGAAAGTGAAGTTGAAGGTCTACAAACGCCACCGAAACCTTTTGTATCTGTACTAGATCTACCATCGAACAATGCTTCAAGCTCTAGCCATACAAAACCAACGGAACCTTCACTTAATTCAGTTGGTTCATCAGAATCAGAATCAGATAGTCTAATTTTGAATGCGACTTAG 1962 0.4312 MFISFSTQKVERGFMALIIVVLILLQSTTCHSHCTSSCGNLRNISRPFRVKGDPKKCGGESYEIACENNVATMSVRSGRYYVQAINYSEGTVRLVDPGVDPNNCSSTPLYFLSRFNFTSDYAWYYQSSLEVIYLTCAEPVKDPLYVSTAPCTGEHHQGAAYSYAVVVVDYLTAKDIRVGCQVKLVVLTDWKDWGLNYSYSDFQVPNYSYADIHRHLVHGFELSWSSCEYYDEVTFHKCDLLSWPSLLISDRFVYVKHFLRLLPSGPVVLHALKVTLGAPCVIILLFRKWRKRHLSMYDSIEEFLQSNSSLMPIRYSYKEIRNMTEGFKDKLGEGGFGTVFKGKLRSRSLVAVKMLSNSKANGQDFMSEIGTIGRIHHVNVVRLIGYCVEGSKCALVYEFMSNGSLDKYIFSEEEGGLALSLKKLYEISIGVARGIAYLHQGCDMQILHFDVKPHNILLDENFTPKVSDFGLAKLYPIDESIVPLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLLEMAGRRKKLNPYAENSSQIYFPSWVYDQFIRGKEIMEITDANEEERKLVKKMITVAFWCIQMKPSVRPTMKKVVEMLESEVEGLQTPPKPFVSVLDLPSNNASSSSHTKPTEPSLNSVGSSESESDSLILNAT 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0225 653 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Glsi14g0225 653 Pfam Wall-associated receptor kinase galacturonan-binding 34 96 IPR025287 GO:0030247
Glsi14g0225 653 PANTHER RUST RESISTANCE KINASE LR10-RELATED 297 623 IPR045874 GO:0004672
Glsi14g0225 653 Gene3D Transferase(Phosphotransferase) domain 1 400 606 - -
Glsi14g0225 653 FunFam serine/threonine-protein kinase PBS1-like 295 399 - -
Glsi14g0225 653 Pfam Protein kinase domain 328 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g0225 653 MobiDBLite consensus disorder prediction 615 653 - -
Glsi14g0225 653 MobiDBLite consensus disorder prediction 616 653 - -
Glsi14g0225 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Glsi14g0225 653 SUPERFAMILY Protein kinase-like (PK-like) 302 598 IPR011009 -
Glsi14g0225 653 CDD STKc_IRAK 331 598 - -
Glsi14g0225 653 SMART serkin_6 325 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g0225 653 FunFam PR5-like receptor kinase 400 608 - -
Glsi14g0225 653 Gene3D Phosphorylase Kinase; domain 1 300 399 - -
Glsi14g0225 653 ProSiteProfiles Protein kinase domain profile. 325 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0225 Glsi-ChrGlsi14 2918131 2922974 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0225 17 632 Receptor kinase-like Gene Family AT5G38260 34.646 1.05e-105 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Glsi14g0225 Pkinase 1.8e-47 CL0016