Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0200 ATGATGGACAGAATCCGGGATAAAGGAGATGAATTCATGAAGTCTCAGTCTCAGTGTTCCTCATCTTCAGTTGTTGCTGTAGCTGTCAAGGGTAACAAGAAGAGCAAAAATGTAGTACAATGGGCACTTGATAAGTTTGTTCCTGAGGGAAGGATTAACTTTAAGCTGATACATGTCTATGCTGGTACAAACGGAGTTCCCACGCCAATGGGAAATGTCATCCCTCTTTCACAAGTGCGTAATGATGTAGCAGCTGCTTTTGAAAAGGAAGTGGAGTGGCAGAGATCTCAAATGCTTCTACCTTATAAGAAAATGTGTGATCAGAGAAAGGTTCATGTAGAAGTTGTACAGATTGAATCTGAAGATGTAGCAAATGCAATAGCAGAGGAAGTTGCTAAGGATGCTATAACCAAACTTGTTATAGGAGCTTCATCCCATGCCATATTTACAAGTAAACTGAAGGGTCTATCTGCAAAGATCTCAGTATGCACTCCAAGATTTTGTACAGTGTATTCTGTTTCGAAAGGGAAATTGTCGTCGGTACGGCAATCAGACATGGTGATTGATGAAAGCATTATGGAGGACAGTAGTGAAACCAGTTGTTCCACCAATAGCTCATCAAACTACAATTCCACCTCTCAAACAGACTCCAGCTCGTTTGCATCATATGCTCCTTTACATTCCTCTTCCCTAGCAGCACAGAGATGTCAAGCTCTTTCAACCATTAATCAGACCCTTCAAAGCACAAATCCTAGTTTAACTACATTATCTAGGTGCCAGTCTCTACATTTTGGGATAGAGAATACTGCTACAAGTTCAGCCAGAAATTCAGATATTGACTGTGCTCTGAGTCGGGCCTCTAGTTACAAAAGCACTCTTTCAGATACTGAATTTTGGAATTATTATCAAAATTCCACCACGGAAGTGCCACCAGCAACTGAGCTTCCATCACCCGATAGGCAGGAAAATTTTAACCTTGAGCTGGAAAAGCTGAGAATTCAACTAAGACATGCCCAAGGAATGCACGCGATAGCTCAAAGTCAGAACATCAAAGCATTGCAAACGCTGAACGATCTAAGTACGAGGCAATCAGAGGAATCCATGAAATTGAAGGATACTATTGCTAAGGAGGAGATGGCCAAAAAATTAGCAAGGCGAGAGAGAGAGAAATATGAAGCTATAAAAGGAGAAGCTGCTTATTTTAAAGAATGTGCTGAAGGAGAAGCTGCTGAAAGAAGAGAAGCAGAGGTGAAAGCTGCTTATGCTGCCATAAAGAATGAAAAGCTAGAGGAAGCTCTTAGTGGTTCTGTGCCCCAGTACAAGAAGTTTACATGGGATGAGATAGTGGCAGCTACCTCATCTTTCTCTGAAGAGCTGAGAATTGGAATGGGAGCATGTGGAACTGTGTACAAGTGTAGTTTGTATCATACAACTGTGGCGGTAAAAGTTCTTCACTCTAAAGAGAACCACAGCAGCAAACAACTCCAGCAGGAGATAGAAATCTTGAGCAGAATTCGTCATCCCAACTTGCTTCTCCTTCTTGGGGCATGTCCTGACCACGGATGCCTTGTGTATGAATACATGGAGAACGGTAGCTTGGAGGACAGGTTACTCCGAAAAAGTAGTTCTGCCCCAATCCCATGGTTCAAGAGATACCAAATTGCTTGGGAAGTGGCCTCAGCTCTTGCCTTTCTCCACAGCTCAAAGCCAAAACCTATCATACACCGTGATTTGAAACCAGCAAACATCTTGCTTGATCATAACCTCATTAGCAGGATCGGTGATATTGGCCTTTCTACAATACTCAATTCAGATACTTTGTCTACCATGTACAAGGACTCAGAGCCTGTTGGGACCCTGTCCTACATGGATCCTGAGTATCAAAGGACAGGGTTAATATCTCCAAAATCTGATGTTTATGCTTTCGGAATGGTGATCTTACAGTTATTGACCTCAAAACCAGCAAGAGGACTTACTCACGTGGTAGAAACAGCAATTGATGATGGAAATCTAGCAGATATATTGGATCCTGAGGCAGGGAATTGGCCAGTTCAGGAGACACTGGACTTGGCTAGATTAGGCCTAAGCTGTGCAGAACTTAGGCGTAGAGACAGGCCTGATTTGAAACATCATGTGCTCCCCACACTAGAGAGACTAAAAGAAGTTGCTGATAGAGCTCCAGGTTCTGCTTCAACTGTTATTGTTAAATCCAGACCTCCTAATCACTTTATCTGCCCAATACTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCGGATGGATATACATATGATTACAAAGCAATTGTAACATGGTTGCAAAAGAATGACAAATCACCAATGACAAATATGACATTGCCTCATAAGAATCTGATTCCTAATTACACACTTCTATCAGCAATTATGGAGTGGAAATCTGCAGAATGA 2427 0.4215 MMDRIRDKGDEFMKSQSQCSSSSVVAVAVKGNKKSKNVVQWALDKFVPEGRINFKLIHVYAGTNGVPTPMGNVIPLSQVRNDVAAAFEKEVEWQRSQMLLPYKKMCDQRKVHVEVVQIESEDVANAIAEEVAKDAITKLVIGASSHAIFTSKLKGLSAKISVCTPRFCTVYSVSKGKLSSVRQSDMVIDESIMEDSSETSCSTNSSSNYNSTSQTDSSSFASYAPLHSSSLAAQRCQALSTINQTLQSTNPSLTTLSRCQSLHFGIENTATSSARNSDIDCALSRASSYKSTLSDTEFWNYYQNSTTEVPPATELPSPDRQENFNLELEKLRIQLRHAQGMHAIAQSQNIKALQTLNDLSTRQSEESMKLKDTIAKEEMAKKLARREREKYEAIKGEAAYFKECAEGEAAERREAEVKAAYAAIKNEKLEEALSGSVPQYKKFTWDEIVAATSSFSEELRIGMGACGTVYKCSLYHTTVAVKVLHSKENHSSKQLQQEIEILSRIRHPNLLLLLGACPDHGCLVYEYMENGSLEDRLLRKSSSAPIPWFKRYQIAWEVASALAFLHSSKPKPIIHRDLKPANILLDHNLISRIGDIGLSTILNSDTLSTMYKDSEPVGTLSYMDPEYQRTGLISPKSDVYAFGMVILQLLTSKPARGLTHVVETAIDDGNLADILDPEAGNWPVQETLDLARLGLSCAELRRRDRPDLKHHVLPTLERLKEVADRAPGSASTVIVKSRPPNHFICPILQDVMDDPCVAADGYTYDYKAIVTWLQKNDKSPMTNMTLPHKNLIPNYTLLSAIMEWKSAE 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0200 808 Gene3D Phosphorylase Kinase; domain 1 424 527 - -
Glsi14g0200 808 Gene3D Transferase(Phosphotransferase) domain 1 528 732 - -
Glsi14g0200 808 CDD RING-Ubox_WDSUB1-like 740 794 - -
Glsi14g0200 808 ProSiteProfiles Protein kinase domain profile. 455 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g0200 808 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 25 153 - -
Glsi14g0200 808 SUPERFAMILY RING/U-box 737 806 - -
Glsi14g0200 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 738 808 IPR013083 -
Glsi14g0200 808 ProSiteProfiles U-box domain profile. 738 808 IPR003613 GO:0004842|GO:0016567
Glsi14g0200 808 Coils Coil 374 394 - -
Glsi14g0200 808 Gene3D HUPs 15 155 IPR014729 -
Glsi14g0200 808 SMART serkin_6 455 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g0200 808 ProSitePatterns Serine/Threonine protein kinases active-site signature. 573 585 IPR008271 GO:0004672|GO:0006468
Glsi14g0200 808 CDD STK_N 30 176 - -
Glsi14g0200 808 SUPERFAMILY Protein kinase-like (PK-like) 437 709 IPR011009 -
Glsi14g0200 808 Pfam U-box domain 740 806 IPR003613 GO:0004842|GO:0016567
Glsi14g0200 808 PANTHER OS02G0152300 PROTEIN 24 803 - -
Glsi14g0200 808 Pfam Protein kinase domain 457 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g0200 808 SMART Ubox_2 742 804 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0200 Glsi-ChrGlsi14 2667348 2677802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0200 22 806 U-box Gene Family AT4G25160 50.360 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Glsi14g0200 Pkinase 4.7e-41 CL0016