Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0189 ATGGCTTTGAGGATTATAGCAATTTCAGCAGTCTCTACAGTGTTAAGCTTTGTGGGTGTAAAATTCGGCTCGGAGCAATTGTTCAATAAGCTAAAATCAGATGGACTGATTGGCAATAATTTCAGTCACCTGGAGAATGCCAGAGGTGTTTTTGAATTGCTTTCGGGATCATACACCACCATAGGGTTACTGGCAAATTTTATGATCAATGCATTTATACTTCTCAATCTTTGTCTCAAGAGTATATTTTTTTCAGAGTTGTATCCTTCTGAAACTCGGAAGATGGTTGAGCGTCTCACTAATTATGTCATCTACAAGGGGGCGTTTCTACCACTAATGGTGCCTCCAACAATATATCAGGCTGGTTTGTGGTCAACCTGGATGATAGTGCTATGTTCTTTGAAGATGTTTCAAGCTTTGGCTAGAGATCGGTTGGAATATTTGAACGCATCTCCATCTGCTAGACCCTGGACATATGTTCGTGTATATTCAGCATTAGTATTGGTTTTCTTGGTTGATGTATTTTGGATAAGGCTTTGTCTGGTGATATATAGAACATACGAGTCCCCTATGTTGCTGTTACTATTCTTTGAGCCTTTCAGTATTGCTTTTGAGACCCTACAGGCTATTTTGGTACATGGATTTCAATTGCTTGATATTTGGCTCCATCATTTAGCATGCAACAGCACTGATTGTGGAAGGTCCAAACTGTTTGACACATTAGCAGCAGGATCATTAATGGAATGGAAGGGGCTTCTTATTCGGAATTTGGGATTTTTCCTAGACATGGCAACTTTAATAATGGCGCTTGGCCATTACACACATATTTGGTGGCTTCATGGCATGGCATTCCATCTTGTAGATGCAGTGCTATTTTTACATATACGTGCATTGCTAAGTGCAATTATAAATCGCATAAGAGGCTTTATCAGGTTAAGGACAGCGCTAGGTGCACTTCATGCGGCTCTTCCTGATGCAACAACTGAGGAGCTACGAGTATATGATGATGAATGTGCTATTTGTAGGGAACCCATGGCCAAGGCTAAAAAGCTAAACTGCAATCACCTTTTCCATCTTGTGTGTTTGAGATCTTGGTTGGATCAAGGCTTGACTGAGATATATTCTTGTCCGACATGTCGAAAGCCACTTTTTGTAGGGCGGCCTGGAAATGAAGCAAACTTCAATGTGGAGGATATGTCAAGCGAAGAACAGCTTGTGAACCAAATAAGTGCAGGACTTGATCAGTCAAACACTGCTAGACGTACCATGGCTGCAGGATTTTATCCCAACCAGACACCAAATTCTATGGAAGGCGTTCCTTGGAGGGGTGCAGGACTGGAGTCAGGTTGGTTGCATTCTTGGCCAAATCAAGGTGTTGATGTGGCTGGTCCTTCTACTGCAATCAGGTCAGTTGGATTAGGAAGAGTTCAAATGATGATGAGGCATCTTGCTTCTGTTGGAGAAACCTATGCGCAGGGTGCCCTTGAAGATACTGCTTGGAGCCTTTGGCCTATTAATCCTTCTCAGGCAACTGCAAGTGGTTCACCTCCTGCTTCTCATGGAAGACCCCTTGGAGGCTCTGGTAGTTTAGATAGGAGAACTGGCTCACTTTCTGCAAATGATAATCTGGCAAATATACTTGCTATGGCTGAGACTGTTAGAGAGGTTTTACCTCATATACCAGATGACATAATTTTCCAGGACCTGCAGCGTACAAATTCTGTCCCAGTGACTCTGAATAATCTTCTCCAAATGTGA 1758 0.4243 MALRIIAISAVSTVLSFVGVKFGSEQLFNKLKSDGLIGNNFSHLENARGVFELLSGSYTTIGLLANFMINAFILLNLCLKSIFFSELYPSETRKMVERLTNYVIYKGAFLPLMVPPTIYQAGLWSTWMIVLCSLKMFQALARDRLEYLNASPSARPWTYVRVYSALVLVFLVDVFWIRLCLVIYRTYESPMLLLLFFEPFSIAFETLQAILVHGFQLLDIWLHHLACNSTDCGRSKLFDTLAAGSLMEWKGLLIRNLGFFLDMATLIMALGHYTHIWWLHGMAFHLVDAVLFLHIRALLSAIINRIRGFIRLRTALGALHAALPDATTEELRVYDDECAICREPMAKAKKLNCNHLFHLVCLRSWLDQGLTEIYSCPTCRKPLFVGRPGNEANFNVEDMSSEEQLVNQISAGLDQSNTARRTMAAGFYPNQTPNSMEGVPWRGAGLESGWLHSWPNQGVDVAGPSTAIRSVGLGRVQMMMRHLASVGETYAQGALEDTAWSLWPINPSQATASGSPPASHGRPLGGSGSLDRRTGSLSANDNLANILAMAETVREVLPHIPDDIIFQDLQRTNSVPVTLNNLLQM 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0189 585 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 11 585 - -
Glsi14g0189 585 Pfam CUE domain 549 585 IPR003892 GO:0043130
Glsi14g0189 585 Gene3D - 544 584 - -
Glsi14g0189 585 SMART ring_2 338 379 IPR001841 -
Glsi14g0189 585 SUPERFAMILY RING/U-box 326 386 - -
Glsi14g0189 585 ProSiteProfiles CUE domain profile. 545 585 IPR003892 GO:0043130
Glsi14g0189 585 CDD CUE_RIN3_plant 546 583 IPR035667 -
Glsi14g0189 585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 386 IPR013083 -
Glsi14g0189 585 FunFam E3 ubiquitin protein ligase RIN2 311 390 - -
Glsi14g0189 585 Pfam Ring finger domain 336 380 IPR001841 -
Glsi14g0189 585 CDD RING-H2_AMFR 336 383 - -
Glsi14g0189 585 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Glsi14g0189 585 MobiDBLite consensus disorder prediction 506 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0189 Glsi-ChrGlsi14 2530725 2540890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0189 43 380 C3H Transcription Factor Family AT3G16090 26.761 1.59e-25 108