Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0170 ATGGAGAAGAAGAACAACAACAGCAGCAGCAGCAGCAGCAATAAAGTCTGTAAGATCTGCAACAGGCGCTTTGCCAGTGGGAAAGCCATGGGAGGGCATATGAGGTCTCACTTTGCCAAATTGCCAGTCCCTCCCAAGCCTGCAATTACCAGCGAACAAGTGCCAGTGACCATGGCTGGTGCTGGTGCTAGTGAAAATTCAACCCAACGTCCATCCAGATCTCCTTCTTCATCTTCTTCACTGACTGTCCATCCCAGGAAGAATCCTATACAGAACTTCCGCTCTCTGAATCGGGACTTCTCGGCCAACTCCGACCTCGACAGAGAAAGCGAATCTGATCAGTCTTACCCGAAAAACCCAACTCGCAGAAGATCCAAACGCCGCCGCAAATTTATTGCAGAAGTGGCGCCCGAGACAAAAGCTGGGCCAAAACAAACGAGTTCGATGTTCGATGCTCTTCTTCCTGTTATAGAAGCTGCTAGGTCTCTTATGATGCTTTCCAAGGATAAATGGCCGGAAAGCCCAGAGGTGATCAAGAAGAAACAACTGGTGGTGGAGGAAGAAGAAGATGACGACGACGACGACGACGAAGGTGAAGATGACTCGCTTATTCTGATTCGCTCTCAGGGAAGCTTCAAGTGCGAGATATGCAACAAAGCGTTTCAATCCTACCAGGCTCTTGGTGGGCACAAAGCTAGCCACAGGAAGATTAAGAATCAATGGGAGGAAGATGTTGAATCTGAAGATGATGATCATGATGATGGCGGCGGCAATGCAGGAAGGAGTAAGGTTGTTGAAGATCCAAAAGGGTTTGAGTGCCCTTACTGCTCCATAGTGTTTGAGTCTGGCCAAGCACTTGGTGGGCACAAGAAGGTACACTTTTCCAATGCAAAGGCTGCTAATGCTCAGAACACTGCTAAGAAATTTGGTGTCAATTTTATTGATCTTAACTTGCCTGCTCCTGGGGAAGATGAAGAGCTTAGCCAGGTCGAGTTTTCAACTGTGTCCAGCGAAGACGATTGA 1023 0.4819 MEKKNNNSSSSSSNKVCKICNRRFASGKAMGGHMRSHFAKLPVPPKPAITSEQVPVTMAGAGASENSTQRPSRSPSSSSSLTVHPRKNPIQNFRSLNRDFSANSDLDRESESDQSYPKNPTRRRSKRRRKFIAEVAPETKAGPKQTSSMFDALLPVIEAARSLMMLSKDKWPESPEVIKKKQLVVEEEEDDDDDDDEGEDDSLILIRSQGSFKCEICNKAFQSYQALGGHKASHRKIKNQWEEDVESEDDDHDDGGGNAGRSKVVEDPKGFECPYCSIVFESGQALGGHKKVHFSNAKAANAQNTAKKFGVNFIDLNLPAPGEDEELSQVEFSTVSSEDD 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0170 340 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 14 332 IPR044303 GO:0006355
Glsi14g0170 340 MobiDBLite consensus disorder prediction 60 100 - -
Glsi14g0170 340 SUPERFAMILY beta-beta-alpha zinc fingers 212 293 IPR036236 -
Glsi14g0170 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 298 IPR013087 -
Glsi14g0170 340 MobiDBLite consensus disorder prediction 168 200 - -
Glsi14g0170 340 MobiDBLite consensus disorder prediction 101 120 - -
Glsi14g0170 340 ProSitePatterns Zinc finger C2H2 type domain signature. 17 37 IPR013087 -
Glsi14g0170 340 MobiDBLite consensus disorder prediction 28 149 - -
Glsi14g0170 340 Pfam C2H2-type zinc finger 212 236 - -
Glsi14g0170 340 Pfam C2H2-type zinc finger 16 37 - -
Glsi14g0170 340 Pfam C2H2-type zinc finger 271 293 - -
Glsi14g0170 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 212 239 IPR013087 -
Glsi14g0170 340 ProSitePatterns Zinc finger C2H2 type domain signature. 273 293 IPR013087 -
Glsi14g0170 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 42 IPR013087 -
Glsi14g0170 340 MobiDBLite consensus disorder prediction 172 186 - -
Glsi14g0170 340 Gene3D Classic Zinc Finger 209 293 - -
Glsi14g0170 340 SMART c2h2final6 15 37 IPR013087 -
Glsi14g0170 340 SMART c2h2final6 271 293 IPR013087 -
Glsi14g0170 340 SMART c2h2final6 212 234 IPR013087 -
Glsi14g0170 340 ProSitePatterns Zinc finger C2H2 type domain signature. 214 234 IPR013087 -
Glsi14g0170 340 MobiDBLite consensus disorder prediction 320 340 - -
Glsi14g0170 340 MobiDBLite consensus disorder prediction 238 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0170 Glsi-ChrGlsi14 2297315 2298337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0170 17 330 C2H2 Transcription Factor Family AT3G60580 32.827 2.85e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi14g0170 zf-C2H2_6 1.6e-12 CL0361