Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0163 ATGGATGCTCTCGAGTCGAATCCTGATCACCCTCCCTTCCCTCAATCCGAACCTCTAGCTTCCTACGCTCCTCCGCCTCCAGAGAACTTCGCATCAGATTATCATAACCCATCACAGGACTCCGACCAACCTGTAACTTCAGATAATCAAATTTCATCGAAAACACTTGCTTCGGATGGTCAAAACACTGATAATGCTCTCCCGAATGCCTCCATGAATGGCCACATGAACGGTTCGAAGCTCGAGGTTGCAAAGCCGTTGGTTTCGGAGAACGGTCTGACTAACAATACCCTGAGTGGCACTGACAAGGATCATTCTGGTGGTGAAGAAGAGACTACAAGCAAACGCCGCCGACGAAGTCGATGGGATCCCCAGCCCGAGTCCAACGACCAGAGCGGAGGCGAGTCGGGTAGCGGGACGAGAAAGAGGAAGTCCCGTTGGGCTGATGACGAGCCAAAGCCGGTGATTCAACTTCCTGATTTCATGGGCGGTATTGAGTTCGATCCTGAAATTCAAGCTCTGAATAGTAGGCTTCTTGAGATTAGTCGAATGCTACAATCAGGTTTGCCTTTAGATGATCGCCCTGAAGGTGCTCGATCGCCTTCGCCTGAACCCATATATGATAATATGGGGATTAGAATTAACACTAGAGAATATCGTGCCCGTGAAAGATTACAAAAGGAGAGGCAAGAGATTATATCTCAGATTATAAAGAAAAACCCTGCATTTAAGCCACCAGCAGATTACAGACCACCAAAGCTTCAGAAGAAGCTTTATATACCAATGAAAGAATATCCTGGTTACAACTTTATTGGGCTTATTATTGGTCCGAGAGGAAACACCCAAAAGCGGATGGAGAGAGAGACTGGTGCTAAGATTGTGATTCGAGGTAAAGGATCAGTGAAAGAGGGTAGGCTGCAACAGAAGAGGGATTTGAAACCTGACCCATCGGAGAATGAAGATTTGCATGTCTTAGTGGAGGCAGAGACACAGGAGTCACTTGATGCCGCTGCAGGTATGGTGGAGAAGCTCTTGCAACCAGTGGATGAGGTATTGAATGAGCATAAGAGGCAACAACTTAGGGAACTTGCAGCTTTGAATGGGACAATTAGGGATGAAGAATATTGCCGACTGTGTGGTGAGCCCGGTCATCGCCAATATGCATGTCCTACACGCACTTCTACATTTAAAAGTGAAGTTGTCTGTAAGCATTGTGGTGATGGTGGTCACCCAAGCATAGATTGTCCGGTAAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTCCTGGCAGAGTTGGGAGGGACAGTACCTGAATCGGCAACTAAGCAAACCAGCACATTGGCAATTGGTTCAGGCAATTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTTCCTCTGCTGGTGGCGCACCTCAAGCTGGCTTAGGGGCTAATGCAATTAAAAAGGAAATTGATGATACAAATTTATATATTGGGTATTTGCCTCCCACTCTTGATGATGATGGTCTGATCCAATTGTTTCAACAATTTGGTGAAATTGTTATGGCGAAAGTTATCAAGGATCGAATGACCAATTTGAGTAAAGGATATGGATTTGTGAAGTATGCTGATATTCAAATGGCTAATAATGCAATCATGGCCATGAATGGTTATCGACTTGAGGGTCGAACTATAGCAGTAAGGGTTGCTGGTAAGCCTCCTCAGCCAACAGTCCCTCCTGGCCCGCCGGCATCTGCTGTTCCCACATATCCTGTTTCAAGCCAGCCAGTTGGTGCCTATCCATCCCAACAATATGCAGCTGGTGGTCCCCTTGCGGGTGCACCCCCTGGAAGTTACGCCCCAGTTCCATGGGGACCTCCAGTTCCTCCTCCATATGCTCATTATGCTCCTCCCCCACCTGGGTCAAACATATATCCACCTATGCAAGGTCAACCTATGCCTCCTTATGGTGTTCAATATCCTCCAGTTCAGACAGGCCCCCCTGGTGCTCCATCCCAGTCTGCAACTTCTAGTGAAGCGCAGCAGAGTTACCCTCCTGGAGTGCAGTCTGACAATAATTCCTCTTCTCAATCTCTATATGGAAGTTCCATACCTCCAATGCCACCATCAGCTCAACCTACATATCCTGCATCCTATGGTTATCCACCTTATTACAATGCAGTTCCCCCACCACCTCCCCCTCCTGCTCCTGTACCTGTTTCGACTGCAGACCAATCTCAGAGCATTTCAAGTATGCCTTGGGCTAGTCCTGTGCCACCTCCTCCTTCTGCAGAGAATGCCTCCTCCGTCTTCAGAGAAGACAGCATATGGTGCAGACTCAGAGTATGA 2340 0.4774 MDALESNPDHPPFPQSEPLASYAPPPPENFASDYHNPSQDSDQPVTSDNQISSKTLASDGQNTDNALPNASMNGHMNGSKLEVAKPLVSENGLTNNTLSGTDKDHSGGEEETTSKRRRRSRWDPQPESNDQSGGESGSGTRKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTSTLAIGSGNSGSNPPWANNSSSAGGAPQAGLGANAIKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMTNLSKGYGFVKYADIQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPTVPPGPPASAVPTYPVSSQPVGAYPSQQYAAGGPLAGAPPGSYAPVPWGPPVPPPYAHYAPPPPGSNIYPPMQGQPMPPYGVQYPPVQTGPPGAPSQSATSSEAQQSYPPGVQSDNNSSSQSLYGSSIPPMPPSAQPTYPASYGYPPYYNAVPPPPPPPAPVPVSTADQSQSISSMPWASPVPPPPSAENASSVFREDSIWCRLRV 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0163 779 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 254 380 IPR036612 GO:0003723
Glsi14g0163 779 SMART kh_6 254 346 IPR004087 GO:0003676
Glsi14g0163 779 CDD KH-I_BBP 253 346 - -
Glsi14g0163 779 Gene3D - 374 427 - -
Glsi14g0163 779 SUPERFAMILY Retrovirus zinc finger-like domains 372 418 IPR036875 GO:0003676|GO:0008270
Glsi14g0163 779 Pfam Splicing factor 1 helix-hairpin domain 143 250 IPR032570 -
Glsi14g0163 779 ProSiteProfiles Type-1 KH domain profile. 269 341 - -
Glsi14g0163 779 FunFam splicing factor 1 374 427 - -
Glsi14g0163 779 MobiDBLite consensus disorder prediction 444 475 - -
Glsi14g0163 779 SMART rrm1_1 492 565 IPR000504 GO:0003723
Glsi14g0163 779 Gene3D - 455 566 IPR012677 -
Glsi14g0163 779 MobiDBLite consensus disorder prediction 103 125 - -
Glsi14g0163 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 493 562 IPR000504 GO:0003723
Glsi14g0163 779 ProSiteProfiles Zinc finger CCHC-type profile. 376 390 IPR001878 GO:0003676|GO:0008270
Glsi14g0163 779 MobiDBLite consensus disorder prediction 720 737 - -
Glsi14g0163 779 PANTHER RNA-BINDING PROTEIN RELATED 107 612 IPR045071 -
Glsi14g0163 779 MobiDBLite consensus disorder prediction 11 25 - -
Glsi14g0163 779 FunFam splicing factor-like protein 1 471 573 - -
Glsi14g0163 779 Pfam KH domain 269 317 IPR004088 GO:0003723
Glsi14g0163 779 MobiDBLite consensus disorder prediction 299 319 - -
Glsi14g0163 779 MobiDBLite consensus disorder prediction 640 665 - -
Glsi14g0163 779 MobiDBLite consensus disorder prediction 188 209 - -
Glsi14g0163 779 Gene3D K Homology domain, type 1 251 373 IPR036612 GO:0003723
Glsi14g0163 779 MobiDBLite consensus disorder prediction 32 76 - -
Glsi14g0163 779 FunFam splicing factor-like protein 1 246 374 - -
Glsi14g0163 779 SUPERFAMILY RNA-binding domain, RBD 488 580 IPR035979 GO:0003676
Glsi14g0163 779 MobiDBLite consensus disorder prediction 444 476 - -
Glsi14g0163 779 Gene3D - 168 246 IPR047086 -
Glsi14g0163 779 MobiDBLite consensus disorder prediction 1 155 - -
Glsi14g0163 779 MobiDBLite consensus disorder prediction 666 702 - -
Glsi14g0163 779 ProSiteProfiles Zinc finger CCHC-type profile. 402 416 IPR001878 GO:0003676|GO:0008270
Glsi14g0163 779 MobiDBLite consensus disorder prediction 137 153 - -
Glsi14g0163 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 491 569 IPR000504 GO:0003723
Glsi14g0163 779 MobiDBLite consensus disorder prediction 640 771 - -
Glsi14g0163 779 SMART c2hcfinal6 375 391 IPR001878 GO:0003676|GO:0008270
Glsi14g0163 779 SMART c2hcfinal6 401 417 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0163 Glsi-ChrGlsi14 2148692 2151096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0163 400 574 Eukaryotic Initiation Factors Gene Family AT3G11400 25.843 1.97e-10 61.2