Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0145 ATGCCCTGTGATGTGAAGGGTGGTAGTGGCTGTTCCATTACGTCACCCAACAACAATATCCCCTTACTCTTTTTGGGGTCTTCTGGTGCCCCTTTAAGATTGCTCATTGGTCTGTGCCGACTCAGAAAAAGAGGGACGAATATGAATTCTTTTTCTTATGTTCCCCCTGGTTTTAGGTTCCATCCCACAGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAAATTACTTCAAGGAGGATTGACCTTAATGTCATAAAAGATGTGGATCTCTACAAAATTGAGCCATGGGATCTTCAAGAGATTTGCAGAATTGGGACAGAAGAGCAAAATGAATGGTACTTCTTCAGCCACAAAGATAAAAAATATCCAACTGGGACTCGCACAAATAGAGCAACAGCAGCAGGGTTTTGGAAAGCAACAGGAAGAGACAAGGCTATCTACTCTAAGCATGACCTGATAGGGATGAGGAAAACCTTGGTGTTTTATAAAGGTCGAGCCCCAAATGGACAAAAATCAGATTGGATTATGCATGAGTATCGGCTAGAAACAGATGAAAATGGCACCCCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAATAACAGCCATGCGCAAAGTGATGAGTGAGCATGACTCGCCCTGTTGGTATGATGACCAACAAGTTTCTAATTTCATGCAAGACTTGGACTCACCAAAGCAAAATTCGCAACCTAATTTGATCTACCAGCTCCCTAATTATCCCTGCAAGAAAGAGTTAGATCATCATCATCCTCATCATGTGCAATACCAGCACCTCCCGGTTCGTGGCCACCACCACTTTCTCCAGCAGCTTCCATTTCTAGAGACCCCAAAATTAATTCAACCTTCAACTTCTGCCACCATAAATAATATCCCAATGGCTGCATACAATCTTCAGTCCTCATCGTCACTCCCACAAGAAGGACAAATTCATCCACACCCGGATCAGCCAAACTTTCAGGCAGTTTATGGTAGCAATAGCCGAGAACCGGTAGTTGATGATGATCAAGTGACTGATTGGCGAGTGCTTGACAAGTTTGTTGCTTCCCAACTTAGCCAAGAAGATGTGCCTAAGGATCAAAACAATATCTTCATTTACACAATGGAGAATGCTAATAACGTTGTACAGTTCAGGAATTTGGAGGAAAAGCAAGAAATGGTGCCTGAAAATGCCTCAACTTCAACCTCAAGTTGCCCAATTGATTTGTGGAAATAG 1248 0.4263 MPCDVKGGSGCSITSPNNNIPLLFLGSSGAPLRLLIGLCRLRKRGTNMNSFSYVPPGFRFHPTDEELVDYYLRKKITSRRIDLNVIKDVDLYKIEPWDLQEICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRITAMRKVMSEHDSPCWYDDQQVSNFMQDLDSPKQNSQPNLIYQLPNYPCKKELDHHHPHHVQYQHLPVRGHHHFLQQLPFLETPKLIQPSTSATINNIPMAAYNLQSSSSLPQEGQIHPHPDQPNFQAVYGSNSREPVVDDDQVTDWRVLDKFVASQLSQEDVPKDQNNIFIYTMENANNVVQFRNLEEKQEMVPENASTSTSSCPIDLWK 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0145 415 Gene3D NAC domain 63 206 IPR036093 GO:0003677|GO:0006355
Glsi14g0145 415 MobiDBLite consensus disorder prediction 313 333 - -
Glsi14g0145 415 Pfam No apical meristem (NAM) protein 55 182 IPR003441 GO:0003677|GO:0006355
Glsi14g0145 415 SUPERFAMILY NAC domain 50 203 IPR036093 GO:0003677|GO:0006355
Glsi14g0145 415 MobiDBLite consensus disorder prediction 397 415 - -
Glsi14g0145 415 MobiDBLite consensus disorder prediction 396 415 - -
Glsi14g0145 415 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 54 293 - -
Glsi14g0145 415 ProSiteProfiles NAC domain profile. 54 203 IPR003441 GO:0003677|GO:0006355
Glsi14g0145 415 FunFam NAC domain-containing protein 63 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0145 Glsi-ChrGlsi14 1930872 1935312 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0145 48 415 NAC Transcription Factor Family AT1G12260 52.525 7.53e-128 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi14g0145 NAM 6.7e-38 No_clan