Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0141 ATGGGTAAGTTATTATTCTTGACTCTCGTTGTATTGGCCTTTTTTTCCCCAATAGCCTCATCAAGAAGATCAAGATCTTCCTCCAGCAATATTGATTGGTGGTGCAACCGAACCCCACACCCTGGACCATGCAAATATTATATGAGTCACACCCACCATCGTTTCAGACCCAAGCACAAATCCCAGTTCCGAGAAATGCTGGTTCAGTTGGCCTTGGATCAAACCCTTTACATGAAAACCAATGCCCGTGGCTATGCACAAGACTATGTCACCATGAATCAGAAAGCTGTGTTCAGCGATTGCTTGAAGCTCTGTGATAATACCATTTTCCATCTGAACCGAACCCTTCAAGGGCTCCGCCACAAGAAAAAGCAGGGCTGCTCCGTTTTTGATGCACAAACATGGCTCAGCACTGCTCTAACAAACCTCCAAACCTGCAAAAATGGAGCCTTAGAGCTGAATGTGTCAGATTACATGGTGTCCACAGTTGGCTACAATCTCACGAAGATGATAAGCAATAGCTTGGCCATCAATGGAGCTTTTCTGAAACTGAATCACCACAGAGATGAGGAAATTACAACCAATGATCGGTTTCCGAGTTGGGTTTCGAGGCATGAGAGGAAGCTATTGACGAGGTCTTCAGTGAAGGCTCATCTTGTGGTGGCCAAAGATGGCTCTGGGCATTTCAGAACAGTTCAAGCCGCTATTAATGCAGCGGCGAGGAGAAGAAGCAAGACGAGGTTTGTTATACGCATAAAGAGAGGGGTTTATAGAGAGAACATTCAGGTTGATAAGCTCAACGATAACATCATGCTGGTCGGTGATGGGATGAGATTTACTATAATAACTAGTGCCAGGAGCGTTCAGGATGGCATTACCACCTATAGCTCGGCAACTGCTGGCATAGATGGCCTTCACTTCATTGCACGTGACATTACCTTTCAAAACACAGCTGGTCCTCACAAGGGACAAGCAGTGGCTCTCCGATCAGCCTCCGACCTCTCTGTCTTCTACCGGTGCTCCATTAAAGGTTACCAAGACACCCTCATGGCCCATGCACAGCGTCAATTTTATAGAGAATGCTACATCTATGGCACCGTCGATTTCATCTTTGGCAACGCTGCAGTTGTTTTTCAAAACTGCATGATTTTTGTAAGGAAGCCTTTAATGGGTCAGGCAAATATGATTATGGCCCAAGGTCGAGGCGACCCGTTCCAGAACACTGGGATCTCGATCCACAATTCTCAGATCCGGGCTGCGCCAGACCTCAAGCCCGTTGTTGGTTCATTCACAACCTACTTGGGCCGACCTTGGCAGCAATATTCTAGGGCTGTGGTCATGAAGTCCTACATAGACAGCTTGGTGAGCCCATTAGGTTGGTCTCCATGGGGGAATACTAATTTTGCTTTGAATACATTGTATTTTGGGGAATACAAGAACTTTGGACCTGGTTCATCCACAAGAAATAGGGTAAAATGGCCAGGATTTCACGCCATAACTAGCCCTGTTGAGGCATCTAGCTTCACCGTGAATAGCCTCCTCGCTGGCCGCACATGGTTGCCATCGACTGGTGTGCCTTTTACTTCTGGTTTATAG 1596 0.4674 MGKLLFLTLVVLAFFSPIASSRRSRSSSSNIDWWCNRTPHPGPCKYYMSHTHHRFRPKHKSQFREMLVQLALDQTLYMKTNARGYAQDYVTMNQKAVFSDCLKLCDNTIFHLNRTLQGLRHKKKQGCSVFDAQTWLSTALTNLQTCKNGALELNVSDYMVSTVGYNLTKMISNSLAINGAFLKLNHHRDEEITTNDRFPSWVSRHERKLLTRSSVKAHLVVAKDGSGHFRTVQAAINAAARRRSKTRFVIRIKRGVYRENIQVDKLNDNIMLVGDGMRFTIITSARSVQDGITTYSSATAGIDGLHFIARDITFQNTAGPHKGQAVALRSASDLSVFYRCSIKGYQDTLMAHAQRQFYRECYIYGTVDFIFGNAAVVFQNCMIFVRKPLMGQANMIMAQGRGDPFQNTGISIHNSQIRAAPDLKPVVGSFTTYLGRPWQQYSRAVVMKSYIDSLVSPLGWSPWGNTNFALNTLYFGEYKNFGPGSSTRNRVKWPGFHAITSPVEASSFTVNSLLAGRTWLPSTGVPFTSGL 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0141 531 SMART PMEI_2 26 177 IPR006501 GO:0004857
Glsi14g0141 531 Pfam Plant invertase/pectin methylesterase inhibitor 30 177 IPR006501 GO:0004857
Glsi14g0141 531 Pfam Pectinesterase 219 516 IPR000070 GO:0030599|GO:0042545
Glsi14g0141 531 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
Glsi14g0141 531 FunFam Pectinesterase 212 531 - -
Glsi14g0141 531 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 181 IPR035513 -
Glsi14g0141 531 ProSitePatterns Pectinesterase signature 1. 244 263 IPR018040 -
Glsi14g0141 531 CDD PMEI-like_3 33 183 - -
Glsi14g0141 531 SUPERFAMILY Pectin lyase-like 215 530 IPR011050 -
Glsi14g0141 531 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 181 IPR035513 -
Glsi14g0141 531 Gene3D - 212 531 IPR012334 -
Glsi14g0141 531 NCBIfam pectinesterase inhibitor domain 5 178 IPR006501 GO:0004857
Glsi14g0141 531 PANTHER PECTINESTERASE 12 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0141 Glsi-ChrGlsi14 1892573 1895363 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0141 27 531 Carbohydrate Esterase AT5G51500 60.118 0.0 633