Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0094 ATGGTGGTGAACGAGAGGCCGTCTAAGAGGATGAAGAGGAGGGTCACGGCTGATCTTTATGACTTTCTAACTTTCCCGGCTCCCGGAGACAGTTGTCACGACGAAGCCGCCGGCGAACCCTTCCGGAAGGCTGTTCAGCGCTTCCTCTCCAACCATGCGCGCCTCACCTTCCCACCCTCGCTCTTCCCCTCCCTGATGACGTGGCAGATATTGTTCCGGGTCGGAGGACTGGTTGACGGGCCCGATCCGTCGCCCTCGACGGTCACCCTCGACATTGTGGAGGAGGATGTCACTAGATCTCGAAGTTCAGTCTACTGCGACCAGTGCCGAGTCGTTGGATGGAGTGGGCATCCTGTCTGTCGAAAGCGATATCACTTCATAATAAGGGCCGCAAGTAATCACATGGATGCATATCAAAGACCTTGTTCAAGGTGTGGAAATTCTCTCATATTATCTGAACCAAGGTGTAAATGGTGTAACACTCTGATTACAGTTGATGATCTTGAAGATTGGGTGTATCTTCAAGTTGAAGATAACACTCATCTTCTGCACGGCGTTGTTCACTCCAATGGTTATGGCCATCTGCTCACTCTTAATGGAAGAGAAGGTGGCTCAAAGCTTCTCACTGGGTCTGACATCATGGGTTTCTGGGATAGGCTCTGTGTTGCACTTGCTGTTAGGAAGGTTAGTGTGATGGATTTGTCAAAGAAGTTTGGGCTTGAATATCGATTGCTTCATGCAATCACCAATGGGCGTTCCTGGTATGGCAATTGGGGCTATGAATTTGGGACTGGTAGCTATGCTCTTACTCAAGATTCGTACCAGAAAGCAGTGAACACCCTGTCTAGCATGCCTCTGTCCAATTTCTTATTCCAGGGTCGTACCCCTCGAAACCGCCTGCAGTGTGTTATTTCTCTCTACCAATCTTTGGCAGATACTGAACTTCTAACTATCAAAGATCTATTCTCCTTTTTGGTGACATTGATTCGTGAGTTCCGCAAGCCCTTGGCCACAAGAACATCTGAACAGCATGAATCTACTGGAACATGTCATGTATTGTGTGCTTGGACAAGGAATGATGTTGAAGCTGTGCAACAGGCTTTGATCAAGGTGCTTCTTGCATCGGGTGCCTCTAATGAGGCCAAATGGGTGACAAGGCGTGCTCTCAAAGGTGCAGTATATAGGGGTTTTGCATCTCCGGAGATTGTAGATTACAGTCTTAAACATTTAGGGGGAAAATTAGCTGCCAATGGCATGGTAGTTAGATCACGATGCAATCCCATTTCTAGTGTTGTAGAGTTCAGGCTTGAACCTTTGAGTGTTATGGAAAATGCGGTTACTGCATATTCAAGTTATCCATCAGAAGTGCAAGTGATCTCTGATCTGAAATTCTTATTCGATTCAATCATTCATCCTGACAAAATGGTGAGCTACAGACCTAGGATTATGAGAAAACGGGTGGCTGATTCGGCAAGGAAGCTCCTTGACTGCAAGCAGTTTATGAAGGATTATAAGCCTGATAAGATTGCAGAACTATCACCATTCATTAGGCTTTGGTGTCACGTGGAGCTTTCGGATCAGCCTAAAGATGACCCAACACCGCCTCCAGAGCTAATTGTCCTGCCTTTGAATGCTACTGTTGCTGACCTCAAGAATGAAGCGACTGGTGCTTTTCAAGAGGTATATGCAATGTATAAGAGGTTTCAAACTGAGGAGCTTCTAGAATATGGGTCTATCAATGATTTTCTCACTGTAAAATTCCTGCTTGGAACGAGTGGTTCAGTCCGAATTCTAGGTAAATGCCCAGCAAAACATGGGCTAAACCGTTTCCGAATGGAAAGAGGAACAGAGACGTGGAAAGTTGATTGTCCTTGCGGGGCTAAGGATGATGATGGGGAAAGGATGTTGGCATGTGATACCTGTGGTGTCTGGCAGCATACCAGATGCGCTGGAATTGATAATTCTGATGCTAGCCCTTCCAAGTTTGTGTGCTTGAGATGCATTAACTCGTACCGCCAGGAAGCCAAAAATCTACCGGACTCTGGTGAAGTTAAAAACTCCTGTAAACCAAACACATCTTGCCGAGGTGAAGTGGTGGCAACTGACAATCCTGCAGTTGCTTGTAACATGACTCTGAATTTTGGTGTACGTTGA 2154 0.4647 MVVNERPSKRMKRRVTADLYDFLTFPAPGDSCHDEAAGEPFRKAVQRFLSNHARLTFPPSLFPSLMTWQILFRVGGLVDGPDPSPSTVTLDIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRAASNHMDAYQRPCSRCGNSLILSEPRCKWCNTLITVDDLEDWVYLQVEDNTHLLHGVVHSNGYGHLLTLNGREGGSKLLTGSDIMGFWDRLCVALAVRKVSVMDLSKKFGLEYRLLHAITNGRSWYGNWGYEFGTGSYALTQDSYQKAVNTLSSMPLSNFLFQGRTPRNRLQCVISLYQSLADTELLTIKDLFSFLVTLIREFRKPLATRTSEQHESTGTCHVLCAWTRNDVEAVQQALIKVLLASGASNEAKWVTRRALKGAVYRGFASPEIVDYSLKHLGGKLAANGMVVRSRCNPISSVVEFRLEPLSVMENAVTAYSSYPSEVQVISDLKFLFDSIIHPDKMVSYRPRIMRKRVADSARKLLDCKQFMKDYKPDKIAELSPFIRLWCHVELSDQPKDDPTPPPELIVLPLNATVADLKNEATGAFQEVYAMYKRFQTEELLEYGSINDFLTVKFLLGTSGSVRILGKCPAKHGLNRFRMERGTETWKVDCPCGAKDDDGERMLACDTCGVWQHTRCAGIDNSDASPSKFVCLRCINSYRQEAKNLPDSGEVKNSCKPNTSCRGEVVATDNPAVACNMTLNFGVR 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0094 717 CDD PHD_MMD1_like 622 667 - -
Glsi14g0094 717 ProSitePatterns Zinc finger PHD-type signature. 623 667 IPR019786 -
Glsi14g0094 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 674 IPR013083 -
Glsi14g0094 717 Pfam PHD-finger 623 669 IPR019787 -
Glsi14g0094 717 SUPERFAMILY FYVE/PHD zinc finger 613 670 IPR011011 -
Glsi14g0094 717 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 678 - -
Glsi14g0094 717 SMART PHD_3 622 668 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0094 Glsi-ChrGlsi14 1209968 1212963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0094 82 667 PHD Transcription Factor Family AT5G22260 30.757 2.60e-87 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi14g0094 PHD 4.3e-09 CL0390