Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0061 ATGGATGAGGGAAAGCGTAAATCTAGGAAGGAAGATTCTGAGGGGAATGAAGAGGATTCCAAGAGGAGTCACCGTGATCGAGATCGTGAAAGAACTGGAGGAAGAGATAAGGATATAAACGAAGGGAGGCACAGGGAAAGGGAGAAGAGGGATCGAGAGTCCTGGCACTATGAGAGAGAGAGAAGTAGTGGTCCTGAAGAAAAAATTGATAGAGAAAGGGAGAAGCACAGAGATAAGAATAAGGATAGGACTCGAGTTCAAGATGAAGAAAGAGAAAGAGCTAGAGACAAGAAAAGGGAAAGAGACAGGGAAGATAGGGAAAGGGAAAGGGAAAGAGAAAGGAGAGAGAGGGCTAGGGAGAAAGAAAGAGGAAAGGATATTAGAGAAAGGGAAAGGAAGGAGGAGAGTAAAAGGGATAGGAGAGAGCGTGAGAGAGAGAGGGAAATGGAAAGAGAAAGGGGGAGGAGAGTACGTGAGAGGGAGAAGCCTAGAGAAGTTGATAGTGAGTATATTGATGATGATTCCAGGGAGCAAGATAGAAAGCGGCACAGGAAAGAGGATGATGATTACAAGGGGAAAGAGAGAGAAAAGAGCATCGGCAAGTCGAACAGGCAAACTGAGAATAATGAGGGGAGCCCAAGGAAAAAGAGTGGCAATGATAACTCAGATACCAAAGAAAAAAAGCCCACCCATGAAGAGGAGATAGAGGATGAACATAGGAGGTTGGATGAAGAGATGGAAAAGAGGAGGAGGAGAGTCCAGGAGTGGCAAGAGCTGAGGAGGAAGAGGGAGGAAGTTGAGAAAGAAAAGCATGGTGAAGCAGGTGCCGAGGAACTCAAGTCTGGGAAGACCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGAATCACTACTGGAAAGCCAGATACAGCTATGGATGTAGATGAAGATGACAAACCTGCTGATAAAAAACCTAGGGATTTGATGCTGGTAGATGTTGGAAATGGAACCGTTGCATCTGGTTTACAGGATGAAGCTTCTGGTCCTCCTGCAGGCGATGAAATTGATCCATTGGATGCTTTCATGAGTTCTATGGTTCTGCCTGAAGTTGAGAAGCTGAACAATGCTGTGGCCCCTTCAACTGCTGATAGAACTGCTGACTTGAAGCTCAAGGATAAAGGGGAAGAGAACTCTCATGGGGGAAACCCGAGGAAAGGTTCAAATAAATCAATTGGGAGAATCATTCCTGGTGAAGAGTCTGATTCAGATTATGCCGTCCTTGAAATTGAAGGGGATCCATTGGATGAAGATGAAGATGACGATGAGTTCATGAAAAGAGTGAAGAAGACAAAAGCCGAGAAACTTTCTATTGTTGACCACTCAAAGATTGATTATAAACCATTCAAGAGAAACTTTTATATTGAAGTTAAGGAGATCTCAAAGTTGACTCCTGAAGAAGTTGCAGCATACAGGAAGCAGTTGGAGTTGAAAATACATGGAAAGGATGTGCCAAAGCCCGTAAAATCATGGCACCAGATTGGACTTACTAGCAAAATTTTGGATACAATAAAGAAGCTTAACTATGAAAAACCGATGCCTATTCAAGCTCAGGCACTCCCAATAATTATGAGTGGTCGAGATTGCATAGGCATTGCTAAAACTGGGTCAGGAAAAACACTTGCTTTTGTTCTGCCAATGTTGAGGCACATCAAGGATCAGCCTCCAGTTGTTGCAGGAGATGGACCTATTGGGCTTATAATGGCCCCTACGAGGGAGCTTGTTCAACAGATTCATAGTGACATAAAGAAGTTTGCAAAAGTACTGGGTCTCAGGTGCGTTCCTGTCTATGGAGGTTCTGGTGTTGCCCAACAAATCAGTGAGTTGAAACGAGGCGCTGAGATTGTGGTTTGTACTCCTGGTAGGATGATTGACATATTATGCACCAGTGGTGGAAAGATAACCAACCTGCGTAGAGTCACCTATCTGGTCATGGATGAGGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACTCGAATTGTTCAGAATATTCGACCAGATCGTCAAACTGTTCTCTTTTCTGCTACTTTCCCTCGTCAGGTTGAAATTCTGGCTCGTAAGGTTTTGAATAAACCTGTTGAAATACAAGTTGGTGGAAGGAGTGTTGTGAACAAGGACATAACACAGCTAGTTGAGGTGAGGCCAGAAAATGAGAGGTTCTTGAGGCTCTTAGAATTATTAGGGGAATGGTATGAGAAGGGAAAGATTTTGATATTTGTCCACTCGCAGGAGAAATGTGATGCTTTGTTCAGGGATTTGCTTAGACATGGTTATCCCTGCCTTTCTCTTCATGGGGCTAAGGATCAGACAGACCGTGAATCCACTATTTCTGACTTTAAAAGCAATGTTTGCAATTTGTTGATTGCAACGAGTGTTGCTGCCAGGGGATTAGATGTCAAGGAACTTGAATTGGTAATTAACTTTGATGTTCCAAATCACTATGAAGATTATGTACATCGTGTTGGACGCACTGGCCGAGCAGGCCGGAAGGGTTGTGCTATCACATTTATTTCTGAGGAAGATGCAAGATATGCACCAGATTTGGTGAAAGCATTGGAGCTATCCGAGCAAATTATTCCTGATGACCTGAAAGCTCTTGCTGATGGCTTTATGGCAAAAGTTAATCAAGGGCTTGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAGGAGGAAGATGAGGTGAGGAGAGCAGCAAAGAAAGCACAAGCCAAAGAATATGGATTTGAAGAAGACAAGTCGGATACTGAAGATGAAGATGAAGGTATTAGGAAGGCAGGAGGTGACATATCACAGCATCCTGCTCTTGCTCAGATTCTTGTTGCTGCCACGAAAGCGAATTCACCTGCAATGCCTGCTGCTTCCCAGTTAATTTCAAATGGTGGACTACCTGTTTCTTTGCCAGCTGTTCTTGGTCTCCAGAGTGCAGCAGTCATGCCTGGGACAGGGCTGCCCATTGCACCAAATGATGGGGCAACTCGGGCTGCATTAGCTGCTATGAACCTACAGAACAAATTAGCAAAGATTGCTGGTGCAATGCCAGAGCATTATGAAGCTGAGTTGGAGATAAATGATTTCCCCCAGAATGCTCGGTGGAAAGTCACACACAAGGAAACTTTAGGCCCAATTTCTGAGTGGACTGGAGCAGCAATTACCACCAGGGGGCAATATTTCCCACCTGGAAGAGTCCCAGGACCTGGAGAACGCAAGCTCTACTTGTTCATTGAGGGTCCTAGTGAGCAGTCTGTTAAGAGAGCGAAAGCAGAGTTGAAGCGTGTGTTGGAAGATATTACAAATCAGGCTTTGCAACTTCCTGGTGCGGCTCAACCAGGCAAATACTCTGTTGTATAA 3414 0.4449 MDEGKRKSRKEDSEGNEEDSKRSHRDRDRERTGGRDKDINEGRHREREKRDRESWHYERERSSGPEEKIDREREKHRDKNKDRTRVQDEERERARDKKRERDREDRERERERERRERAREKERGKDIRERERKEESKRDRREREREREMERERGRRVREREKPREVDSEYIDDDSREQDRKRHRKEDDDYKGKEREKSIGKSNRQTENNEGSPRKKSGNDNSDTKEKKPTHEEEIEDEHRRLDEEMEKRRRRVQEWQELRRKREEVEKEKHGEAGAEELKSGKTWTLEGESDDEEGITTGKPDTAMDVDEDDKPADKKPRDLMLVDVGNGTVASGLQDEASGPPAGDEIDPLDAFMSSMVLPEVEKLNNAVAPSTADRTADLKLKDKGEENSHGGNPRKGSNKSIGRIIPGEESDSDYAVLEIEGDPLDEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYKPFKRNFYIEVKEISKLTPEEVAAYRKQLELKIHGKDVPKPVKSWHQIGLTSKILDTIKKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPENERFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQIIPDDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDTEDEDEGIRKAGGDISQHPALAQILVAATKANSPAMPAASQLISNGGLPVSLPAVLGLQSAAVMPGTGLPIAPNDGATRAALAAMNLQNKLAKIAGAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGRVPGPGERKLYLFIEGPSEQSVKRAKAELKRVLEDITNQALQLPGAAQPGKYSVV 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0061 1137 Coils Coil 133 153 - -
Glsi14g0061 1137 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 657 665 IPR000629 -
Glsi14g0061 1137 CDD DEADc_DDX46 491 712 - -
Glsi14g0061 1137 FunFam probable ATP-dependent RNA helicase DDX17 464 714 - -
Glsi14g0061 1137 Pfam Helicase conserved C-terminal domain 736 844 IPR001650 -
Glsi14g0061 1137 Pfam DEAD/DEAH box helicase 527 698 IPR011545 GO:0003676|GO:0005524
Glsi14g0061 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 430 861 IPR027417 -
Glsi14g0061 1137 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 722 883 IPR001650 -
Glsi14g0061 1137 Coils Coil 1101 1124 - -
Glsi14g0061 1137 CDD KH-I_AtRH42_like 1034 1136 - -
Glsi14g0061 1137 Gene3D - 712 886 IPR027417 -
Glsi14g0061 1137 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 502 530 IPR014014 GO:0003724
Glsi14g0061 1137 SMART helicmild6 763 844 IPR001650 -
Glsi14g0061 1137 SMART ultradead3 521 726 IPR014001 -
Glsi14g0061 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 649 883 IPR027417 -
Glsi14g0061 1137 CDD SF2_C_DEAD 723 853 - -
Glsi14g0061 1137 MobiDBLite consensus disorder prediction 1 322 - -
Glsi14g0061 1137 MobiDBLite consensus disorder prediction 332 351 - -
Glsi14g0061 1137 MobiDBLite consensus disorder prediction 922 949 - -
Glsi14g0061 1137 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 533 711 IPR014001 -
Glsi14g0061 1137 PANTHER RNA HELICASE 448 922 - -
Glsi14g0061 1137 MobiDBLite consensus disorder prediction 368 411 - -
Glsi14g0061 1137 MobiDBLite consensus disorder prediction 379 396 - -
Glsi14g0061 1137 Coils Coil 232 259 - -
Glsi14g0061 1137 Coils Coil 69 130 - -
Glsi14g0061 1137 Gene3D - 454 711 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0061 Glsi-ChrGlsi14 869861 873274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0061 489 864 Eukaryotic Initiation Factors Gene Family AT3G19760 32.368 8.16e-58 203