Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0054 ATGGACATACCTTCAAGTAGCAGCCATGGTGCTGCATCTTCTTCCTACAGAGGTGTCCGCAAGAGGAAGTGGGGCAAATGGGTGTCTGAAATCCGTGAGCCTGGCACGAAGACGAGAATTTGGTTAGGGAGCTTCGAGACCCCAGAGATGGCCGCGGCAGCCTATGATGTCGCCGCCTTGCACTTCCGGGGACGCGAGGCGAGGCTTAATTTCCCTGAGCTGGCCACCAGCCTTCCTCGCCCAGCCAGTAACAATGCTGACGACATTCGCATGGCGGCGCATGAGGCAGCCTTGAGGTTCAGGACCAATACATTAGTGGCAGCAGCAGGGGGTGGCGGGTCTTCCGGCTCTGCCGCCGCGGTGGTCGCGCCAGTCACCGTGAGGCTCTCACCGACGCAGATTCAGGCCATCAATGAGTCGCCACTGGACTCACCCAAGATGTGGATGCAAATGTCTGAGACGCTTATGCTGGAGGAACAGTCCATGATGTTTGAGGACAATGAATGGGAGAATATGCAAAGTGATTCTCTTTGGGATCCGTAG 543 0.5672 MDIPSSSSHGAASSSYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGREARLNFPELATSLPRPASNNADDIRMAAHEAALRFRTNTLVAAAGGGGSSGSAAAVVAPVTVRLSPTQIQAINESPLDSPKMWMQMSETLMLEEQSMMFEDNEWENMQSDSLWDP 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0054 180 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Glsi14g0054 180 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Glsi14g0054 180 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Glsi14g0054 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 152 - -
Glsi14g0054 180 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Glsi14g0054 180 FunFam Ethylene-responsive transcription factor 2 14 73 - -
Glsi14g0054 180 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Glsi14g0054 180 SUPERFAMILY DNA-binding domain 14 73 IPR016177 GO:0003677
Glsi14g0054 180 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Glsi14g0054 180 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0054 Glsi-ChrGlsi14 806328 806870 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0054 14 180 AP2-EREBP Transcription Factor Family AT1G71450 65.868 4.94e-68 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi14g0054 AP2 1.8e-13 CL0081