Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0053 ATGAGTTACGGGTCAGGCGAGAATGAAAGAAGCACAACGGAGAACAAGTTCAGGGGAGTTCGGTGTAGAAAATGGGGCAAGTGGGTGTCGGAGATTCGAGTTCCCGGCACCAAGGAACGGCTATGGTTGGGCACATACTCTACGCCGGAGGCTGCAGCCATGGCTCATGATGTTGCTTTCTACTGCCTGAAGAGACCATCTTCAATGGAGAAGCTCAACTTCCCGGCGATGCTGCCGTCTTATTGTGTCCAGCACAGAGACATGTCGCCGAGGTCTGTGCAGAAGGTGGCATCGGATGCTGGTATGGCTCTTGATGCACAGAGGATTTCCGGGAAGCCATTGATGACAACGACGGAGGAGGCTTATGGGATGGAGAAAAGTGATACTGATCACAGACATCACACTGATGATGGATTTTGGTGGGAAGGTGGGGTTGGTGATGATGATGGCACTAGCGAATCAAGGGATGATCATAGAGGAGAGGGACTGAGCATTTCCATAGAAGATTATACTAATTTAGGAGTTGAAGATTGTCCTCTCTTCTGGTAA 549 0.5009 MSYGSGENERSTTENKFRGVRCRKWGKWVSEIRVPGTKERLWLGTYSTPEAAAMAHDVAFYCLKRPSSMEKLNFPAMLPSYCVQHRDMSPRSVQKVASDAGMALDAQRISGKPLMTTTEEAYGMEKSDTDHRHHTDDGFWWEGGVGDDDGTSESRDDHRGEGLSISIEDYTNLGVEDCPLFW 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0053 182 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Glsi14g0053 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 130 - -
Glsi14g0053 182 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Glsi14g0053 182 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Glsi14g0053 182 SMART rav1_2 16 81 IPR001471 GO:0003700|GO:0006355
Glsi14g0053 182 MobiDBLite consensus disorder prediction 141 160 - -
Glsi14g0053 182 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Glsi14g0053 182 Pfam AP2 domain 16 63 IPR001471 GO:0003700|GO:0006355
Glsi14g0053 182 Gene3D AP2/ERF domain 15 77 IPR036955 GO:0003700|GO:0006355
Glsi14g0053 182 ProSiteProfiles AP2/ERF domain profile. 16 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0053 Glsi-ChrGlsi14 790938 791486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0053 12 106 AP2-EREBP Transcription Factor Family AT1G71520 62.887 1.35e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi14g0053 AP2 2e-10 CL0081