Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0036 ATGACGCGCGTTATTCAACTCCCCTGCGACGGTGATGGTGTCTGTATGGTCTGCAAGGCGAAGCCGGCGGAGGAAGAGAGGCTGACATGCAAAACCTGCGCCACCCCTTGGCACGTTGGTTGTCTCTCTTCCCCTCCGGCAACGATGGCGGAGACCCTTCAGTGGGAGTGTCCCGACTGCTCCACGCCACCCTCCGACCTTCCCCCGGTGGCTGTTTGCAAGGCCTTACTTGACGGAGCCGGCGATGGGTCTGCTGACTTGATGGCTGCGATTCGGGCGATAGAGGCGGATGCTTCTCTAACGGAGCTGGAGAAGGCTAAGAAACGTCAACGGCTCATGAGTGGAAAGGCTGGGTCGGTAGACGACGAGGATGAAGTGAAGAAGAAGGGAGAAGGTCAAGGAAAGGACGTGTTAGATATACTTAGTGGGACGCTGAACTGCTCCTTCTGTATGCAGCTACCGGAGAGGCCTGTGACGACTCCATGTGGGCACAATTTCTGCCTAAAATGCTTTCAGAAATGGATTGGGCAAGGAAAACAAACTTGTGCAAAGTGTCGTCGCACTATACCCCCCAAAATGGCAAGCCAGCCACGTATCAATTCTTCACTTGTAATTGCCATCCGTATGGCAAAAGTGTCCAAAAATATTGGTGCTGGAGAAACTTCTAAAGTTTACCATTTTGTACATAATCAAGATAGACCAGAAAAGGCATATATGACTGAGCGGGCACAAAGGAAAGGCAAGTCAAATGCAGCAAGTGGAAAGATTTTTGTAACTGTGGCCCAGGATCATTTTGGTCCAATTCCAGCTGAGAATGATCCAGTGCGGAATCAGGGTGTGCTGGTTGGTGAATGTTGGGAAGATAGGCTTGAATGCCGGCAATGGGGCGCTCACTTCCCACATGTTAGTGGTATTGCTGGACAGTCAGGTCATGGTGCACAGTCGGTTGTTCTTTCTGGTGGTTATGTTGATGATGAGGATCATGGAGAGTGGTTTCTTTATACAGGAAGTGGCGGTAGGGATTTAAGCGGCAACAAACGCACAAACAAGACACAATCTTTTGATCAGAAGTTTGAGAAGTCGAACCTAGCTCTCCAAGTTAGTTGTCGCAAGGGTTATCCTGTTCGAGTTGTAAGATCTCACAAAGAGAAGCGATCCTCATATGCCCCTGAGAAAGGATTACGTTATGATGGTGTTTATAGAATTGAAAAGTGTTGGAAGAAAGTGGGATTGCAGGGTTTCAAGGTTTGCCGGTATTTGTTTGTTAGATGTGATAATGAACCAGCCCCTTGGACAAGTGATGATCATGGGGATCGCCCCAGACCATTGCCAGTAATTTCTGAGTTGAAAAAGGCTACAGACTTAACTGAAAGGAAGGACAGTCCATCTTGGGATTTTGATGAGGAAGATTCTTGCTGGAAATGGAAGAAACCACCGCCTCCCAGCCAAAGACAGGTAAGAAGTGGAGATCCTAAGGAGATAGAGAGGTCAAGGAGAGAAATAAGGAAAGCCCAAAATATGTCAATTAGGGAAAGATTGCTGAGAGAATTCAGTTGCCTTATCTGCAGGAAGGTTATGGTTTCTCCTGTGACGACACCCTGTGCTCATAATTTCTGTAAGTCATGTTTGGAAGGTGCATTTATGGGTCAGGCTTTCGTGAGAGACAGAAACAGGGGTGGAAGATCACTTCGGACCCAGAAAAATGTGATGAAATGTCCTTCTTGCCCTATTGACATATCTGATTTTCTTCAAAACCTTCAGGTTAATAGAGAGTTGATGGGTGTGATTGAGTCACTGAAAGCCAAGGCTGAAGAAATTGGTGATTCAATGGAGGAGTCATGCGAGGGTGCTGATGGACCAGAGGTAGATTGTGATGAAACTGATGCTGGTTTTCAAGAGAAAGCTGACGATGGTCCTAACATGCAAAATAATGATGAAGATAGGGAAAACCCAATTAAGAAGCACAATGTTTCACCTGAAGAATCTGATGTCAGTGAACTTCAGTCAGGAGGACTTGAAGTGGCCAATGTGGTGCCAGATCCTGCTGTGAAGTGCAATGGAAAAAGAAAGAAAGCTGATGCTAATGAACTTTTGCCTAAAAGGGGTGATGGTAAAAGGCGTAGAAGAGGCAGAAAAGCTGAGAATGAAGCAGTGGATAAAGGAAATGATTCCCCATCAAGTTCTCTTCATTTGCAATCAGATCATGACTGA 2211 0.4659 MTRVIQLPCDGDGVCMVCKAKPAEEERLTCKTCATPWHVGCLSSPPATMAETLQWECPDCSTPPSDLPPVAVCKALLDGAGDGSADLMAAIRAIEADASLTELEKAKKRQRLMSGKAGSVDDEDEVKKKGEGQGKDVLDILSGTLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKQTCAKCRRTIPPKMASQPRINSSLVIAIRMAKVSKNIGAGETSKVYHFVHNQDRPEKAYMTERAQRKGKSNAASGKIFVTVAQDHFGPIPAENDPVRNQGVLVGECWEDRLECRQWGAHFPHVSGIAGQSGHGAQSVVLSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKTQSFDQKFEKSNLALQVSCRKGYPVRVVRSHKEKRSSYAPEKGLRYDGVYRIEKCWKKVGLQGFKVCRYLFVRCDNEPAPWTSDDHGDRPRPLPVISELKKATDLTERKDSPSWDFDEEDSCWKWKKPPPPSQRQVRSGDPKEIERSRREIRKAQNMSIRERLLREFSCLICRKVMVSPVTTPCAHNFCKSCLEGAFMGQAFVRDRNRGGRSLRTQKNVMKCPSCPIDISDFLQNLQVNRELMGVIESLKAKAEEIGDSMEESCEGADGPEVDCDETDAGFQEKADDGPNMQNNDEDRENPIKKHNVSPEESDVSELQSGGLEVANVVPDPAVKCNGKRKKADANELLPKRGDGKRRRRGRKAENEAVDKGNDSPSSSLHLQSDHD 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0036 736 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 93 214 - -
Glsi14g0036 736 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 62 IPR013083 -
Glsi14g0036 736 ProSitePatterns Zinc finger RING-type signature. 534 543 IPR017907 -
Glsi14g0036 736 MobiDBLite consensus disorder prediction 607 736 - -
Glsi14g0036 736 MobiDBLite consensus disorder prediction 684 719 - -
Glsi14g0036 736 SUPERFAMILY RING/U-box 139 194 - -
Glsi14g0036 736 MobiDBLite consensus disorder prediction 454 496 - -
Glsi14g0036 736 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 246 441 - -
Glsi14g0036 736 SMART ring_2 15 60 IPR001841 -
Glsi14g0036 736 SMART ring_2 519 575 IPR001841 -
Glsi14g0036 736 SMART ring_2 147 185 IPR001841 -
Glsi14g0036 736 SUPERFAMILY FYVE/PHD zinc finger 8 62 IPR011011 -
Glsi14g0036 736 ProSiteProfiles Zinc finger RING-type profile. 519 575 IPR001841 -
Glsi14g0036 736 MobiDBLite consensus disorder prediction 610 626 - -
Glsi14g0036 736 Pfam SAD/SRA domain 277 426 IPR003105 -
Glsi14g0036 736 MobiDBLite consensus disorder prediction 627 661 - -
Glsi14g0036 736 SUPERFAMILY RING/U-box 512 601 - -
Glsi14g0036 736 CDD RING-HC_ORTHRUS_rpt1 145 190 IPR047498 -
Glsi14g0036 736 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 609 IPR045134 -
Glsi14g0036 736 SUPERFAMILY PUA domain-like 250 444 IPR015947 -
Glsi14g0036 736 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 212 IPR013083 -
Glsi14g0036 736 ProSiteProfiles Zinc finger RING-type profile. 147 186 IPR001841 -
Glsi14g0036 736 MobiDBLite consensus disorder prediction 111 131 - -
Glsi14g0036 736 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 497 617 IPR013083 -
Glsi14g0036 736 Pfam Zinc finger, C3HC4 type (RING finger) 147 185 IPR018957 GO:0046872
Glsi14g0036 736 Gene3D - 246 444 IPR036987 -
Glsi14g0036 736 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Glsi14g0036 736 ProSiteProfiles YDG domain profile. 275 423 IPR003105 -
Glsi14g0036 736 SMART PHD_3 14 61 IPR001965 -
Glsi14g0036 736 SMART G9a_1 270 427 IPR003105 -
Glsi14g0036 736 MobiDBLite consensus disorder prediction 454 475 - -
Glsi14g0036 736 Pfam RING-type zinc-finger 519 573 IPR027370 -
Glsi14g0036 736 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0036 Glsi-ChrGlsi14 606670 612088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0036 1 610 C2H2 Transcription Factor Family AT5G39550 61.889 0.0 758