Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0031 ATGCAGCCCACATCTGCCGGTAGCAGCGGCGGTGGCGGTGGCGGTGAACTGGGTCGAGGTGGGCTTGCCCGGTTCCATTCAACTCCGGCCACTTGGTTAGAAGCACTGCTCAAGGAGGAAGACGAAGAAGAGCCATTGGATACTACTCAGTGCTTCACTCAGCTGCTCGCTGGTAGTAACAACTTGCCCACTACACCCACCTCCAGAAATTCGGCCCCGTTCGATTCGCCAGCTGATGGGGGCTGTTTCGACGCCGGGTCGTCCAGTGGGTTTTTCCGGCAGAATAGTTCTCCGGCGGAGTTTTTTGGAAATTCAGTGGTTGGGTCTGAAGGGTACTTCTCCAAGTATGGGGTTCAATCCAATTACGACTACGTTTCACAAGATATTGATATTTCTTCCATGGCTAATGCTAATCCAATCAGACAGGAAGTCGAGCGTAGTGGTAAAGCACCGGAGATGGACATAGAGAAGATTTTGGAGGATTCGGTACCTTGCAGAGTTCGCGCAAAGCGTGGCTATGCCACACATCCAAGGAGCATTGCTGAAAGGGTGCGGAGAACTCGGATAAGTGACCGCATAAGGAAGCTGCAAGAACTTGTGCCAAACATGGATAAGCAAACAAATACCGCAGATATGTTAGACGAGGCAGTAGCATATGTCAAGTCTCTACAGAAGCAGATTGAGGAACTTACAGAGCACCAACGAAGATGTAAATGCATGGTTCAAGAGTAA 732 0.5041 MQPTSAGSSGGGGGGELGRGGLARFHSTPATWLEALLKEEDEEEPLDTTQCFTQLLAGSNNLPTTPTSRNSAPFDSPADGGCFDAGSSSGFFRQNSSPAEFFGNSVVGSEGYFSKYGVQSNYDYVSQDIDISSMANANPIRQEVERSGKAPEMDIEKILEDSVPCRVRAKRGYATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKSLQKQIEELTEHQRRCKCMVQE 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0031 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 241 IPR036638 GO:0046983
Glsi14g0031 243 FunFam Transcription factor bHLH130 family 174 242 - -
Glsi14g0031 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 223 IPR011598 GO:0046983
Glsi14g0031 243 Gene3D - 174 243 IPR036638 GO:0046983
Glsi14g0031 243 Coils Coil 213 243 - -
Glsi14g0031 243 Pfam Helix-loop-helix DNA-binding domain 178 224 IPR011598 GO:0046983
Glsi14g0031 243 MobiDBLite consensus disorder prediction 1 23 - -
Glsi14g0031 243 SMART finulus 179 229 IPR011598 GO:0046983
Glsi14g0031 243 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 72 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0031 Glsi-ChrGlsi14 561020 564952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0031 24 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 52.500 5.20e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi14g0031 HLH 9.2e-10 No_clan