Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0027 ATGACCGCTTCCCACCATTGTGGCACTAGAGATTTTGATAATTGTACCAAGGGCTCCAAACTTTCCTCAAGGCTCCGCCGTCTCCCTTCTCCCACTCTTTGTGCTGCACAGGTTGAAGAATCACTAATGGCATTCGTTAGAGCTCAAAAATCAAAGGCCTACTTCAAGAGGTATCAAGTCAAGTTTAAGAGAAGGAGAGAAGGTAAGACAGATTATCGTGCCAGAATTCGGTTGATAAATCAGGACAAGAACAAGTACAACACCCCAAAGTATCGCTTCGTGGTTCGATTTACAAACAAGGACATCACTGCACAAATAACATCTGCTAGCATTGCTGGTGACATTATTCTGGCTGCAGCTTATGCACATGAACTGCCTCACTTTGGCCTTGAAGTAGGTCTTACTAACTATGCAGCAGCATATTGCACTGGACTCCTCTTGGCCCGTCGTGTCCTTAAAATGCTTGAGATGGATGGGGAGTATGAGGGGAATGTTGAGGCTACGGGAGAGGACTTTTCAGTTGAACCTTCTGAGACCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTGTTAGGACTACAACTGGAAACCGTGTTTTTGGTGCCCTCAAGGGAGCTTTGGATGGGGGTCTGGATATTCCTCACAGTGATAAAAGATTTGCTGGTTTTAATAAGGAGAAGAAGGAGCTTGATGCTGATGTTCACCGCAAATATATCTTTGGTGGTCACGTTGCTGACTATATGAAGACTTTGATGGAAGATGAACCAGAGAAATACCAGTCACACTTTAGTGAATATATCAAGCAAGGAATAGAGCCTGATGGAATTGAGGCAATGTACAAAAAGGTTCATGCTGCCATTCGTGCAGACCCCACGATTAAGAAGTCAGATAAGGAACCACCGAAGGAACACAAGCGATACAACCTCAAGAAGCTTACTTATGAGGAGAGGAAGGCAAGGCTGATTGATCGTTTGCAGGCTCTCAACAATGCAGCTGGTGAAGATGACGACGACGATGATGAGTGA 1029 0.4519 MTASHHCGTRDFDNCTKGSKLSSRLRRLPSPTLCAAQVEESLMAFVRAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQITSASIAGDIILAAAYAHELPHFGLEVGLTNYAAAYCTGLLLARRVLKMLEMDGEYEGNVEATGEDFSVEPSETRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFNKEKKELDADVHRKYIFGGHVADYMKTLMEDEPEKYQSHFSEYIKQGIEPDGIEAMYKKVHAAIRADPTIKKSDKEPPKEHKRYNLKKLTYEERKARLIDRLQALNNAAGEDDDDDDE 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0027 342 Gene3D - 43 333 - -
Glsi14g0027 342 Pfam Ribosomal L18 C-terminal region 277 330 IPR025607 -
Glsi14g0027 342 Coils Coil 312 332 - -
Glsi14g0027 342 CDD Ribosomal_L18_L5e 83 212 - -
Glsi14g0027 342 Hamap 50S ribosomal protein L18 [rplR]. 56 288 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Glsi14g0027 342 MobiDBLite consensus disorder prediction 292 311 - -
Glsi14g0027 342 FunFam 60S ribosomal protein L5 43 333 - -
Glsi14g0027 342 PRINTS Ribosomal protein L5 signature 62 81 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Glsi14g0027 342 PRINTS Ribosomal protein L5 signature 248 268 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Glsi14g0027 342 PRINTS Ribosomal protein L5 signature 126 146 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Glsi14g0027 342 PRINTS Ribosomal protein L5 signature 206 225 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Glsi14g0027 342 PRINTS Ribosomal protein L5 signature 85 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Glsi14g0027 342 PRINTS Ribosomal protein L5 signature 186 205 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Glsi14g0027 342 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 56 217 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Glsi14g0027 342 PANTHER RIBOSOMAL PROTEIN L5-RELATED 43 332 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Glsi14g0027 342 SUPERFAMILY Translational machinery components 53 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0027 Glsi-ChrGlsi14 532014 536491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0027 43 334 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 81.507 0.0 506