Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0022 ATGGGACGTTCCCCTTGTTGTGAGAAAGCACACACCAACAAAGGTGCTTGGACTAAAGAAGAAGACCAGCGTCTTATCGACTATATCCGCGTCCATGGCGAAGGTTGCTGGCGGTCTCTCCCCAAAGCTGCTGGTAGCCCCTCGGTTTCGATTGTTTATGTTTTTCTGGGGTTGCTTAGATGCGGAAAGAGTTGCAGATTGAGGTGGATAAACTACCTTCGTCCTGATCTCAAACGTGGAAATTTCACTGAAGAAGAAGATGAACTCATCATCAAGTTACATAGTTTGCTTGGAAATAAATGGTCTGTGATTGCAGCGCGATTACCTGGTAGAACCGACAATGAGATCAAGAACTACTGGAACACTCACATAAAGCGCAAGCTCATCGGCCGCGGAATCAACCCGCAAACGCACCGTCCTCTCAATGAAACGGCCTCCGTCCATTCCGCCACCGCCCAGTGGGCTTTTAAGAACTCCTCGCCCACGAATTTTTCGGCTGGAGAAATGGACCTCGGGAAGCAGAGTGACGGTTTCAACTGCATCAGTTTCGGCCCCGGATTGAAGCCCAATAGAGAGGCGGTTGAAGATTTGAATTGCACCAGCAGTGGCACCACCACCGAGGAAGGATTGCCATTGCAGCAGGGTTTGCATGGTGGCGAACCCAATCTGGAGCTATCAATCGGCCTGGTCCCGTTTCAGTCCGAGTCAACTCGTGCGGGGCGGGGAAATTCGGCTGAGTCGAAACCGGGGCGAGTTCATGGGCAGGTCTCTGGGTCGGCGGAGTCGGTAGTTCAAACGGTGGCAGAAGCGACGGTTTGTTTGTGTTGGCAACTGGGTTTTCAGGGCGGTGGTGAAGTGTGTGGAAACTGCCACAACACAAATCGCTTGAATAGATTTTCCACGCATTTAAATTGTTAA 918 0.512 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRVHGEGCWRSLPKAAGSPSVSIVYVFLGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSVIAARLPGRTDNEIKNYWNTHIKRKLIGRGINPQTHRPLNETASVHSATAQWAFKNSSPTNFSAGEMDLGKQSDGFNCISFGPGLKPNREAVEDLNCTSSGTTTEEGLPLQQGLHGGEPNLELSIGLVPFQSESTRAGRGNSAESKPGRVHGQVSGSAESVVQTVAEATVCLCWQLGFQGGGEVCGNCHNTNRLNRFSTHLNC 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0022 305 CDD SANT 16 73 IPR001005 -
Glsi14g0022 305 CDD SANT 81 124 IPR001005 -
Glsi14g0022 305 SMART sant 78 126 IPR001005 -
Glsi14g0022 305 SMART sant 13 75 IPR001005 -
Glsi14g0022 305 FunFam MYB-related transcription factor 13 78 - -
Glsi14g0022 305 Gene3D - 14 78 - -
Glsi14g0022 305 FunFam Myb transcription factor 80 149 - -
Glsi14g0022 305 ProSiteProfiles Myb-like domain profile. 9 73 IPR001005 -
Glsi14g0022 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 73 IPR017930 -
Glsi14g0022 305 Pfam Myb-like DNA-binding domain 79 123 IPR001005 -
Glsi14g0022 305 Pfam Myb-like DNA-binding domain 14 73 IPR001005 -
Glsi14g0022 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Glsi14g0022 305 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Glsi14g0022 305 MobiDBLite consensus disorder prediction 236 257 - -
Glsi14g0022 305 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 155 - -
Glsi14g0022 305 Gene3D - 80 152 - -
Glsi14g0022 305 SUPERFAMILY Homeodomain-like 13 120 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0022 Glsi-ChrGlsi14 456651 457769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0022 1 249 MYB Transcription Factor Family AT4G09460 57.031 1.99e-90 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi14g0022 Myb_DNA-binding 2.8e-13 CL0123