Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0018 ATGAGTCTTATCATTCTTGTGTTTACGCTTGCATATTTTTATGTTGAAGCAAAAGGGTCTTTCTTTTTTATTCAGAGGATACACTTTACAAGACTTTCTGGCCCTAAAGGGGTTCTTCATGGTGTTTTTCATGGGTTAAGGAAGAGAGAGAGCCTAATGAAGAAAAGGAGTATTATATCGTCTGTTATCAGAAAAGGGGTTGTACCATCTCCAAATCTTATCACGGTTTGTAGGACATTTCTATATCAATCTGGTTCGTTATCTTATAATTTTCTCTCCATTTTTGGTGTTCTTGTAAAGGAGCTTTCAAAGATGGGGAGGGGAAAGATAGAAATCAAAAGAATTGAGAACACAACAAATCGCCAGGTCACCTTCTGCAAGCGTAGGAATGGGCTTCTGAAGAAGGCTTATGAGCTATCAGTGCTCTGTGATGCAGAAGTTGCCCTCATCGTCTTCTCAAGCCGGGGTCGCCTCTACGAGTATTCAAACAACAACATAAGGTCAACTATTGAGAGGTACAAAAAGGCTTGTTCAGATAATTCAAGTACCACTATTACTGAAATCAATGCTCAGTATTATCAACAAGAATCTGCGAAGCTGAGGCAGCAAATACAGATGCTGCAAAATTCCAACAGGCACTTGATGGGTGATGCCTTGAGCACACTGACTGTGAAGGAGCTTAAGCAACTGGAAAATAGACTTGAGAGAGGAATCACTAGAATCAGGTCTAAGAAGCATGAGATGCTGCTGGCAGAAATCGAATACTTGCAGAAAAGGGAGATTGAACTGGAAAATGAAAATCTTTGCCTTCGGACTAAGATATCTGATGTTGAGAGGATTCAGCAAGCAAATATGGTTTCTGGACCAGAGCTGAATGCCATCCAGGCATTAGCTTCCCGCAATTTCTTCAATCCAAGCTTGATGGAACCTGGAACTGTCTACCCACAATCAGACAAGAAGATGCTTCACCTTGGGAAAAATTCCACATTTGAACTGGATGCCTCTAAAGGCAATAGCTTGAGCTACAATTTTCCACAATTTCGCTTAATGGTAAATACAATCTATATTCCTAGAGTCGTCCGTGGTCTGTGTGGTTCCTATACCCCTGAGTAA 1113 0.4088 MSLIILVFTLAYFYVEAKGSFFFIQRIHFTRLSGPKGVLHGVFHGLRKRESLMKKRSIISSVIRKGVVPSPNLITVCRTFLYQSGSLSYNFLSIFGVLVKELSKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERYKKACSDNSSTTITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENLCLRTKISDVERIQQANMVSGPELNAIQALASRNFFNPSLMEPGTVYPQSDKKMLHLGKNSTFELDASKGNSLSYNFPQFRLMVNTIYIPRVVRGLCGSYTPE 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0018 370 SUPERFAMILY SRF-like 106 194 IPR036879 GO:0003677|GO:0046983
Glsi14g0018 370 Coils Coil 190 210 - -
Glsi14g0018 370 PANTHER SERUM RESPONSE FACTOR HOMOLOG 107 272 - -
Glsi14g0018 370 ProSitePatterns MADS-box domain signature. 107 161 IPR002100 GO:0003677|GO:0046983
Glsi14g0018 370 ProSiteProfiles K-box domain profile. 190 280 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi14g0018 370 Gene3D - 117 212 IPR036879 GO:0003677|GO:0046983
Glsi14g0018 370 PRINTS MADS domain signature 142 163 IPR002100 GO:0003677|GO:0046983
Glsi14g0018 370 PRINTS MADS domain signature 107 127 IPR002100 GO:0003677|GO:0046983
Glsi14g0018 370 PRINTS MADS domain signature 127 142 IPR002100 GO:0003677|GO:0046983
Glsi14g0018 370 Coils Coil 227 266 - -
Glsi14g0018 370 SMART madsneu2 105 164 IPR002100 GO:0003677|GO:0046983
Glsi14g0018 370 CDD MADS_MEF2_like 106 179 IPR033896 GO:0000977|GO:0045944
Glsi14g0018 370 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 114 161 IPR002100 GO:0003677|GO:0046983
Glsi14g0018 370 Pfam K-box region 189 274 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi14g0018 370 ProSiteProfiles MADS-box domain profile. 105 165 IPR002100 GO:0003677|GO:0046983
Glsi14g0018 370 FunFam agamous-like MADS-box protein AGL11 117 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0018 Glsi-ChrGlsi14 391372 405057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0018 105 325 MADS-box Gene Family AT4G09960 75.217 8.41e-119 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi14g0018 K-box 1.6e-26 No_clan