Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0009 ATGGCTTTTCTCCTTAATTACCGCCCAAGCTGCTACCTCTTCATTTGCTTGTACTTCCTTTCTTCTTTTCTAGTCATAAATTCACTATCCACTGTTTCCATTTCTGAAACTTCCAACCAAACATTAATTTGTGCCTTGCAAAATTCAAACCGGCTAGGACAAGCACATCTCAACTGCACTAGTTTTTCCCCTGGCATTCAAATTCAAGTGAATTCCAATATTTCCTATTCCGAGATTGTGGGAGGATATGGGTTTCTATGTGCATTGCGGCCATCATCATCATCTTCTTCTACTTCTATCATGAGTTGTTGGAGATTCTCTACCAATGCAACAAATGTTCCCTCTAAGCGTGTATACCGTGGGCCTTTGGTTCAAAATCTTGATGCTGGGAACTCCCAGATTTGTGGCCTTGCCAGTGCGAACAATGCCCTTCAATGTTGGCAGTGGCCTGAGTTAAATAAAAGCATGGCGAGGAACTTCTCGAGCATAGCTGTGGGAGGGAATTTCTTATGTGGGTTATTGGAAACCAGAAAAATCAACTGCATAGGAAATAATAGCATAGTTGTTGGCCATGAACCCGGTGGGAACTACTCTGTAATTGCAGCTGGAACCAGTCATGTCTGTGCTGTCTCTTCTAATGGTAGTTTGGTTTGCTGGGGTGACATTCGAGGTGCAACACCACAAGGGAGTTTCATTGCTTTGGCGTTGGGAGAGAATCGAAGTTGTGCTCTTCGGGCTAATGATCAAACATTGATTTGTTGGGGGTCAGATAATTTTCACATTCCAGAGAGCTTGCTAGGGATCTCTTTTCAAGCAATTGCGGCCAAACAAAGTGTTTTCTGTGGGGTGAAGTCCGAAGATTATTCTTTGCATTGTTGGGGAAATGATAATTTGGGGCCAAATACTAAGGTGTTTGATAAAGTCCTCCCAGGCCCTTGTAGGAATAGGAGTGTATGTTCATGCGGGCCATTGCCAGATGCTGCTCGATTCTGTAATCAGGGAATCATTTGCAAGCCTTGTGAGAGCCAAACTCCAACAGTAGCTGAATCCCAATCACCATCACCACCACTATTTAGTCCTTCCCAACCTCGAAACAGGGTTTGGAGCAACAAAATGGTAGCTTTTTTAGTGGTTGGATGTGTTGGTTCAGTTTCTTTGTTGCTAGTCTTGGCTTTCTTTCTTTACAAATATTGCAAATGCAGAGGTTTCCGTGTCCATGACTCAGGGCCCTTGGATGAGTCAGGGACCTCACCAAACCTACCAGAAGTTCCGCAAGCTCAACCTGTTCAACCAGTTCTGGAGAAGCGATTGAGTCATATAATTAGCATGGGAAATGGGGGCCATTTGGAGGAGTTTTCTCTCCAACTACTCCTTAAAGCCACCAACAATTTTTCAGAGGATCAGAAAATCGGGACAGGCAGCTTCGGTTCGGTCTACCATGCCACACTTGAAGAAGATGGGAGGGAAGTTGCCATAAAAAGAGCCGAAATCTCACCCACGTCCCCATCATACAAGCGCCAAGAAGACAAAGACAATGCCTTTGTGAATGAGCTCGAATCTCTGTCCAGACTCAACCATAGAAACCTGGTCAGGTTATTGGGTTACTTTGCAGACAGCAATGAGAGCATTTTGGTCTATGATTACATGGACAATGGCAGCCTAAATGACCATCTCCACGAGCTCAATAGTTCTTCTCCCCTCATGTCATGGGCAGGGCGCATTAAGGTAGCTCTAGATGCAGCTAGAGGGATAGAGTACCTCCATGAGTATGCCATTCCACCAATCATTCACCGTGATATAAAGTCAGCAAATATACTATTGGATGCCAAATGGACAGCAAAAGTGTCAGATTTTGGACTCTCCTTAATGGGTCCTGAAGATGAAGAATCTCATCTTTCACTTCTAGCAGCAGGCACTGTTGGCTACATGGACCCAGAATACTATAGGCTGCAGCACTTGACCACAAAGAGTGATGTCTACAGCTTTGGTGTGGTTTTGCTGGAATTGCTATGTGGGTACAAAGCCATCCACAAAAACGAGAATGGGATACCAAGAAATGTGGTAGATTTTGTGGTGCCGTACATTGTGCAGGATGAAATTCACAGGGTTTTGGACCAGAGGGTGCCACCCCCAACACCATTTGAGATAGAGGCAGTGGCATTTGTGGGCTATTTGGCTGCAGATTGTGTTAATTTAGAAGGCAGAGATAGGCCATCTATGACTCAAGTTGTAAATAGCTTGGAAAGAGCATTGACTGCGTGTTTAGCCCAACCAAAACTGTCCTGGTCCACCGCCGGTTCTTCCGAGTAG 2310 0.4485 MAFLLNYRPSCYLFICLYFLSSFLVINSLSTVSISETSNQTLICALQNSNRLGQAHLNCTSFSPGIQIQVNSNISYSEIVGGYGFLCALRPSSSSSSTSIMSCWRFSTNATNVPSKRVYRGPLVQNLDAGNSQICGLASANNALQCWQWPELNKSMARNFSSIAVGGNFLCGLLETRKINCIGNNSIVVGHEPGGNYSVIAAGTSHVCAVSSNGSLVCWGDIRGATPQGSFIALALGENRSCALRANDQTLICWGSDNFHIPESLLGISFQAIAAKQSVFCGVKSEDYSLHCWGNDNLGPNTKVFDKVLPGPCRNRSVCSCGPLPDAARFCNQGIICKPCESQTPTVAESQSPSPPLFSPSQPRNRVWSNKMVAFLVVGCVGSVSLLLVLAFFLYKYCKCRGFRVHDSGPLDESGTSPNLPEVPQAQPVQPVLEKRLSHIISMGNGGHLEEFSLQLLLKATNNFSEDQKIGTGSFGSVYHATLEEDGREVAIKRAEISPTSPSYKRQEDKDNAFVNELESLSRLNHRNLVRLLGYFADSNESILVYDYMDNGSLNDHLHELNSSSPLMSWAGRIKVALDAARGIEYLHEYAIPPIIHRDIKSANILLDAKWTAKVSDFGLSLMGPEDEESHLSLLAAGTVGYMDPEYYRLQHLTTKSDVYSFGVVLLELLCGYKAIHKNENGIPRNVVDFVVPYIVQDEIHRVLDQRVPPPTPFEIEAVAFVGYLAADCVNLEGRDRPSMTQVVNSLERALTACLAQPKLSWSTAGSSE 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0009 769 FunFam Serine/threonine-protein kinase-like protein CCR4 549 764 - -
Glsi14g0009 769 Gene3D - 31 189 IPR009091 -
Glsi14g0009 769 Pfam Protein kinase domain 464 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g0009 769 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 41 757 IPR044815 GO:0004674
Glsi14g0009 769 Gene3D Phosphorylase Kinase; domain 1 438 548 - -
Glsi14g0009 769 ProSiteProfiles Protein kinase domain profile. 464 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g0009 769 Gene3D - 190 308 IPR009091 -
Glsi14g0009 769 SUPERFAMILY RCC1/BLIP-II 115 299 IPR009091 -
Glsi14g0009 769 CDD STKc_IRAK 470 749 - -
Glsi14g0009 769 Gene3D Transferase(Phosphotransferase) domain 1 549 758 - -
Glsi14g0009 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 595 607 IPR008271 GO:0004672|GO:0006468
Glsi14g0009 769 SMART serkin_6 464 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g0009 769 SUPERFAMILY Protein kinase-like (PK-like) 441 747 IPR011009 -
Glsi14g0009 769 ProSitePatterns Protein kinases ATP-binding region signature. 470 493 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0009 Glsi-ChrGlsi14 200788 203097 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0009 28 759 Receptor kinase-like Gene Family AT5G47850 50.794 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Glsi14g0009 Pkinase 6.1e-47 CL0016