Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0008 ATGAATCTGCTGGCAGAAATGTATTCTCAAGATGAGATGATCCCAAAGATGAATAAAGTAATTAAATTGGGAGACAACGAAATGGCTAATCTACATGGAGTTGCTGGTGGTGGTGATGATGTTGACAAAAATCCGTATATGCTTTCAATGTTGGCACCACGCTTGTGGCCCTTTATGAGGCATAGTATCACATCTGTCCGTTATTCAGCTATTCGCACTTTGGAGAGGCTGCTTGAAGCTGGATACAAGAGAAGCATATCTGAGCATTCTAGCGCTTGTTCATTTTGGCCTTCTTTTATACTGGGAGACACTCTTCAAATTGTCTTTCAGAATCTGCTACTGGAATCAAATGAGTCTATTTTGCAGTGTTCTGAGAGAGTTTGGAGGCTCCTTGTTCAGTGTTCAGTAGAAGACTTGGAGAGATCTGCCAGGTCTTACATGACTTCTTGGATTGAACTTGCGTCTACACCATTTGGTGCAGCATTAGATGCCTCAAAAATGTTTTGGCCTGTTGCCTTCCCACGAAAAAGTCAATTTAGAGCAGCAGCTAAAATGAGAGCTGTGAAGATTGAAAATGAATCTGGTGGGGATCTTGGCGTGGATTCTACGAGAGAAATTAATCAACGAGAAAGAAATGGAGATATTGCTATGAGTTCTGTCAAAATAGTTGTTGGTGCCGATGTGGACACATCAGTAACTCATACTAGAGTGATAACTGCAACTGCCTTGGGAATTTTTGCTTCTAAGCTGCCAGAGGATTCTATCAAATATGTGATCCATCCACTGTGGAACTCTCTTACCTCTTTGTCTGGTGTCCAGCGCCAGGTGGCAGCAATGGTACTTAGTTCTTGGTTCAAGGAGATTAATAAAAGGCATTTATCTGAAAACCATAATAATATTCCTAGTGTCCCCAATTATCTCAAAGATTGGTTGCTGGACTTACTGGCATGTTCTGACCCAGCATTCCCGACAAAAGATTCACTTCTTCCTTATGCTGAGCTTTCAAGAACGTATTCAAAGATGCGTAGTGAGGCTGGTCAATTGCTTAATGCTATCAAATCTTCTGGTATGTTTAGTGAGTTATTGTCAACTATGAATATTGAGTTGGAGAGCTTGAGTGTGGATGATGCGCTTAATTTTGCATCAAAAGTTCCAGCATTGTGTAGCGATAGTGCTGGCAATGAATCCTTGGGAAGAAACATTATGGATGACATTGAGTCATCAAAACAGAGAGTCTTGGCAACTTCTGGGTATTTAAAATGTGTTCAGAGCAATTTGCATATTACGGTTTCATCTGCTGTTGCGGCTGCAGTTGTCTGGATGTCAGAATTTCCTTCACGTCTCACCCCAATTATTTTGCCTTTGATGGCTTCTATCAAACGAGAGCAGGAGGAAATACTGCAAATGAAGTCAGCTGAGGCACTTGCTGAGCTTATGTATCATTGTGTTGCACGTAGGCCTTGTCCCAATGATAAGTTAATTAAGAATATTTGTGGTTTGACTTGTATGGATCCCTCTGAGACACCTCAAGCTGAGTTCATTAGATCCATGGAGAGTATTGATGACCAAGGTCTTCTGTCCTTTAGAGCTCCCGTGGGTAAACAGAAGACAAAGGTCCATGGGCTGTCTGGTGAAGATCGATCAAAGGTGGAGGGTTTTATTAGCAGACGTGGATCTGAACTCTCACTGAGGCTTCTGTGTGAGAAGTTCAGTGCTTCTTTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAAGTGCTTAATCCAAGCTCTGCTGAATCTCTGGCAGCTGATGAAAAACAAATCACTTGGGCTATTGAGTCTATTAGCAATCCCCAATTCTTGATTAACAATATCCAGGTGGTACGTTCTATTGCTCCCATGCTAAATGAGGAGTTGAAGCCAAAACTGTTGACACTTCTCCCATGCATATTCAAATGTATTAAGCATCCTCACGTTGCAGTTAGATTAGCTGCTTCACGCTGCATCACTTCAATGGCCAGGTCTATGACTTTGGAAGTCATGGGAGCTGTGGTTGATAATGCTATCCCTATGTTGGCAGATGCATCGTCAGTTCATGCCCGGCAAGGAGCTGGCATGCTGATTAGCTTTCTTGTTCAGGGACTGGGTGTAGAGTTGGTCCCTTATGCTCCTCTGTTGGTCGTTCCACTTCTTAGGTGTATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTGACCCATAGTTTTGCGGCTCTTGTACCTCTACTTCCTTTAGCACGAGGCCTTCCTCCACCTATTGGATTAGGGGAAGGTTTATCTAGAAACGCAGAAGATGTGCAATTTTTGGAGCAACTACTTGACAACTCTCATATCGAAGACTACAAATTGTGCACTGAATTGAAAGTAACGTTGAGAAGGTATCAACAGGAAGGAATAAATTGGTTGTCTTTCTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGACGACATGGGGCTTGGTAAGACACTCCAGGCATCAGCAATGGTGGCCTCTGATATAGTTGAGCGTCAAACTTCAAATGAGAATGAGGATCTTCTGCCCTCTTTAATCCTTTGCCCATCAACACTTGTTGCACACTGGGCTTTTGAGATTGAGAAGTATATCGATGTTTCTGTTATATCTACTCTTCAATATGGTGGTTCTGCTCAGGAGCGGACGTGTCTTAGAGATCATTTCTGCAAGCATAATGTTATCATAACATCATATGATGTTGTTCGTAAAGATATTGATTATTTGGGTCAACTGCAATGGAATTACTGCATTTTAGATGAAGGACATATAATTAAGAATGCTAAGTCCAAAGTTACCCTTGCTGTAAAGCAGTTGAAAGCCCAACACCGTTTGATATTGAGTGGAACGCCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTCCTAATGCCAGGATTTCTTGGTACAGAGAGACAGTTCCAAGCCACTTATGGAAAACCACTCCTAGCTGCAAGAGATCCCAAGTGTTCTGCTAAGGATGCTGAAGCTGGAGCACTTGCTATGGAAGCATTACATAAGCAGGTCATGCCTTTCCTCCTTCGTCGAACAAAGGAAGAAGTCTTGTCGGATCTGCCAGAAAAAATAATTCAGGACAGGTTCTGTGATTTGAGCCCTGTACAATTTAAACTTTATGAACAGTTTTCTGGTTCTAGCGCCAAACAAGAGATTTCTTCCATAGTAACAATGAATGAGTCAGCTGCAACAGAAGGAAGTAACAGATCACCTAAAGCATCTTCACATGTTTTCCAGGCGCTCCAATACTTGCTAAAACTGTGCAGTCATCCATTGCTGATCATTGGTGAAAAGATTCCAGATCCACTCTCTGCCATTGTCTCAGAATTGTTGCCTGCTGGCTCTGACATCATTTCAGAACTTCACAAACTGCATCACTCCCCAAAATTGGTTGCTCTTCAGGAGATTCTTGAAGAGTGTGGAATTGGAGTTGATGCTTCTGGTTCTGAGGGTTCTGTTAGCATTGGACAGCACAGAGTCTTGATATTTGCCCAGCATAAGGCTTTTCTGGATATTATTGAAAGAGATTTGTTCCAGACATATATGAAGAATGTCACATATTTGCGACTGGATGGATCTGTTGAGCCAGATAAGCGTTTTGAAATTGTCAAAGTTTTCAATTCAGACCCTACTATTGATGTTTTGTTGCTTACAACACATGTGGGTGGGCTTGGTTTAAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCAATGCGAGATCATCAGTTTGATAAGCACATTCAAGGGTATGAAACGTCCAATATTTCTTTTGCTATAGCAATGTCTCTTACACTAATTGCCTTGCAGGCTATGGACAGAGCACACCGTTTAGGTCAGAAAAAAGTTGTTAATGTCCACCGTCTAATAATGCGTGGGACTTTGGAAGAGAAAGTTATGAGCCTACAAAGGTTCAAAGTTTCTGTGGCTAATGCTGTCATTAATGCGGAAAATGCCAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAAACCTCCAAGGGGGCTTCTGGTGCAAAGCGTTCAAATAACTTCGATGGAGACACTAAATCAGTAGGCAGCGGGAAGGGATTGAAAGCAATACTTGGGGGTTTGGAAGAGCTTTGGGACCATTCACAATATACAGAAGAGTACAATCTGAGTCAATTTTTAGCAAAGCTTAATGGCTGA 4266 0.4182 MNLLAEMYSQDEMIPKMNKVIKLGDNEMANLHGVAGGGDDVDKNPYMLSMLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSISEHSSACSFWPSFILGDTLQIVFQNLLLESNESILQCSERVWRLLVQCSVEDLERSARSYMTSWIELASTPFGAALDASKMFWPVAFPRKSQFRAAAKMRAVKIENESGGDLGVDSTREINQRERNGDIAMSSVKIVVGADVDTSVTHTRVITATALGIFASKLPEDSIKYVIHPLWNSLTSLSGVQRQVAAMVLSSWFKEINKRHLSENHNNIPSVPNYLKDWLLDLLACSDPAFPTKDSLLPYAELSRTYSKMRSEAGQLLNAIKSSGMFSELLSTMNIELESLSVDDALNFASKVPALCSDSAGNESLGRNIMDDIESSKQRVLATSGYLKCVQSNLHITVSSAVAAAVVWMSEFPSRLTPIILPLMASIKREQEEILQMKSAEALAELMYHCVARRPCPNDKLIKNICGLTCMDPSETPQAEFIRSMESIDDQGLLSFRAPVGKQKTKVHGLSGEDRSKVEGFISRRGSELSLRLLCEKFSASLFDKLPKLWDCLTEVLNPSSAESLAADEKQITWAIESISNPQFLINNIQVVRSIAPMLNEELKPKLLTLLPCIFKCIKHPHVAVRLAASRCITSMARSMTLEVMGAVVDNAIPMLADASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPPPIGLGEGLSRNAEDVQFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLSFLKRFKLHGILCDDMGLGKTLQASAMVASDIVERQTSNENEDLLPSLILCPSTLVAHWAFEIEKYIDVSVISTLQYGGSAQERTCLRDHFCKHNVIITSYDVVRKDIDYLGQLQWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKEEVLSDLPEKIIQDRFCDLSPVQFKLYEQFSGSSAKQEISSIVTMNESAATEGSNRSPKASSHVFQALQYLLKLCSHPLLIIGEKIPDPLSAIVSELLPAGSDIISELHKLHHSPKLVALQEILEECGIGVDASGSEGSVSIGQHRVLIFAQHKAFLDIIERDLFQTYMKNVTYLRLDGSVEPDKRFEIVKVFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQFDKHIQGYETSNISFAIAMSLTLIALQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASAETSKGASGAKRSNNFDGDTKSVGSGKGLKAILGGLEELWDHSQYTEEYNLSQFLAKLNG 1421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0008 1421 SMART ultradead3 796 993 IPR014001 -
Glsi14g0008 1421 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 812 982 IPR014001 -
Glsi14g0008 1421 Pfam HEAT repeat 642 670 IPR000357 GO:0005515
Glsi14g0008 1421 Gene3D - 1042 1383 IPR027417 -
Glsi14g0008 1421 Gene3D - 226 757 IPR011989 -
Glsi14g0008 1421 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1168 1351 IPR001650 -
Glsi14g0008 1421 Pfam Helicase conserved C-terminal domain 1178 1304 IPR001650 -
Glsi14g0008 1421 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1295 1420 IPR044972 GO:0003677|GO:0016887|GO:0017025
Glsi14g0008 1421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1033 1361 IPR027417 -
Glsi14g0008 1421 SMART helicmild6 1192 1305 IPR001650 -
Glsi14g0008 1421 Pfam Domain of unknown function (DUF3535) 127 584 IPR022707 -
Glsi14g0008 1421 Pfam SNF2-related domain 812 1114 IPR000330 GO:0005524|GO:0140658
Glsi14g0008 1421 CDD SF2_C_SNF 1147 1316 - -
Glsi14g0008 1421 FunFam B-TFIID TATA-box-binding protein-associated factor 1 770 1031 - -
Glsi14g0008 1421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 782 1032 IPR027417 -
Glsi14g0008 1421 CDD DEXHc_Mot1 800 1032 IPR044078 GO:0005524
Glsi14g0008 1421 SUPERFAMILY ARM repeat 47 840 IPR016024 -
Glsi14g0008 1421 FunFam TATA-binding protein-associated factor BTAF1 548 758 - -
Glsi14g0008 1421 Gene3D - 771 1031 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0008 Glsi-ChrGlsi14 168885 197837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0008 795 1360 RAD5 or RAD16-like Gene Family AT1G02670 25.079 1.23e-38 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi14g0008 DUF3535 7.4e-105 No_clan