Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g2003 ATGGCGGCTGCATTTACAACCCTGTCGTTGCCGTGTCCACGAAGCGGCACGCAGATCAGAGTTTTGCACCCGACGAGTAGTACCGGTTCAATCAAGCTCGCCAGATTTCCGTCGCGGTCTAATTTATGCTCCTCATCCACCGCCTTCACCGGTTCCTTCCTTCTGAAGCCTTCCACTTCTTTTTGGAGTTCTTCTTCCCGAGAAAAATCGCCTTCTTCCAGCTTCGTCTGTGCCAGTTCTGTGGAGTCACCTTTGCAATCAAAAGTTACTCAGAAGGTGTATTTTGACATAAGCATTGGAAATCCTGTGGGGAAGCTTGCTGGAAGGATTGTGATTGGACTCTATGGTGATGACGTACCCCAAACAGCAGAAAACTTTCGTGCCCTTTGTACAGGAGAGAAAGGCTTTGGGTACAAAGGTTCTACATTTCATCGTGTAATAAAGGATTTCATGATTCAAGGAGGGGACTTTGACAAAGGGAATGGAACTGGAGGCAAAAGTATATATGGTCGCACTTTCAAAGATGAGAACTTCAAGTTGTCTCATATGGGCCCAGGAATTGTTAGCATGGCAAATGCAGGCCCCAACACCAATGGTAGTCAGTTTTTTATATGCACTGTCAAGACTCCATGGCTGGATCAGAGGCATGTTGTATTTGGCCAAGTTTTGGAAGGGATGGACATTGTTAGGTTGATTGAGTCACAGGAGACGGATCGAGGTGACCGTCCAAGAAAGAAGGTGGTTATCATTGATTGTGGTGAGCTTCCAGTTGCTTGA 777 0.4659 MAAAFTTLSLPCPRSGTQIRVLHPTSSTGSIKLARFPSRSNLCSSSTAFTGSFLLKPSTSFWSSSSREKSPSSSFVCASSVESPLQSKVTQKVYFDISIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHMGPGIVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPRKKVVIIDCGELPVA 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g2003 258 Gene3D - 78 258 IPR029000 -
Glsi13g2003 258 SUPERFAMILY Cyclophilin-like 88 255 IPR029000 -
Glsi13g2003 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Glsi13g2003 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 143 155 IPR002130 GO:0000413|GO:0003755
Glsi13g2003 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 201 213 IPR002130 GO:0000413|GO:0003755
Glsi13g2003 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 214 229 IPR002130 GO:0000413|GO:0003755
Glsi13g2003 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 114 129 IPR002130 GO:0000413|GO:0003755
Glsi13g2003 258 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 138 155 IPR020892 GO:0003755|GO:0006457
Glsi13g2003 258 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 104 254 IPR002130 GO:0000413|GO:0003755
Glsi13g2003 258 FunFam Peptidyl-prolyl cis-trans isomerase 79 258 - -
Glsi13g2003 258 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 105 253 IPR002130 GO:0000413|GO:0003755
Glsi13g2003 258 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 92 255 - -
Glsi13g2003 258 CDD cyclophilin_ABH_like 92 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g2003 Glsi-ChrGlsi13 35464459 35468761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g2003 108 252 U-box Gene Family AT5G67530 47.945 1.11e-35 132