Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g2000 ATGGATACTTGTTTCATGTCATACTTCTATCGTTTCAGAAGTTCGGCCAATTCATTCCTCTCTCAATACGAACCTATTGTTCTGCTTCTCTCTCCTCTGCTTTGTCTCCTTCTCGCCCACACTATTCGGTCATTTTTTCAGCTCGTTCATGATCAAGGACTTAAACCTACTCTTCTAGGGTTTCTCATCAATTCTATCAAATTGATCCCTGGTGTGAAGACTTACATCGATGCCCAAAAGCAGAAGGTTGTGGATAAGTTGCAGTCTGATAGTAAGTCTAAAAGAGAAGGTTGGAGAACAGAGTTGCCAAGGGCAGGACTAAGGATGGAAGTTATTGAGAAAATGAGAGATGAGAAAAGAAATGATGTGATTTGGCAGGGAAAATGCTCTGGTACAGTCTATATTGGAGGAAGTGAATTTGATGAACACTTTTCTTTGATAAATGAGGCTTGCTCGATGTTTGCACATACCAATCCGTTGCATATGGATGTATTTCAGAGTGTTGTACGCTTTGAGGCAGAAGTTGTTGCAATGACAGCTGCAATTCTTGGAAGTAAAGAAAAGAGTTCTGGAGGAAAAATATGTGGAAATATGACATCGGGAGGGACTGAAAGTATATTATTAGCTGTCAAATCATCTCGTGACTATATGAAGTCTAAGAAAGGAGTTACAAGACCCGAAATGATAATACCTGAGTCTGCACACTCAGCATATGACAAGGCTGCACAATATTTTAACATCAAACTCTGGCGTGTCCCCGTTAACAAAAGATTTCAAGCAGATCTGAAAGCTATTCGACAGCATATCAACAGAAATACCATCTTGATTGTTGGATCTGCCCCTGGGTTTCCTCATGGAATAATTGATCCCATTGAAGAACTCGGTGATCTGGCGTCAAGCTTTGGAATTTGTTTTCATGTTGACCTTTGTCTTGGTGGCTTTGTATTACCTTTTGCTCGTGAGCTTGGGTACCCCATTCCAGCTTTTGATTTTTCTGTCAAAGGAGTTTCTTCAATATCAGTGGATGTACATAAATACGGTTTAGCTCCTAAAGGAACAAGCATAGTACTATACAGGAATCATGAAATCAGAAAGCATCAATTTGTTGCTGTTACTGAGTGGTCTGGTGGGTTATATGTGTCTCCAACCATGGCTGGAAGCAGACCTGGAGGTCTTATTGCTGGGGCTTGGGCAGCAATGATGTCTTTAGGGCATGAAGGTTACCTGGAGAATACAAAAGCAATTATGGAAGTGTCGAACAGAATACAGAAAGGCATAGTGGAGATTCCTGAGTTGTTCATCATTGGAAGACCTGACATGACAATTGTGGCATTTGGATCTGATGTTCTGGACATATTTGAAGTCAATGATATCATGTCATCCAGAGGGTGGCATTTGAATGCATTGCAGAGACCTAACAGCGTCCATATCTGTGTGACTCTGCAGCATGTGGCAGTTGTTGAAGACTTCCTCAGGGATTTAAAGGAATCTGTGATAACTGTGAAAGAGAATCCGGGTCCAATAAGTGGAGGGCTAGCACCTGTATATGGTGCCGCAGGGAAGATGCCGGATAGAGTTATGGTCCAGGAATTGTTGATAGATTTCATGGACGGTACCTGCTAG 1623 0.4171 MDTCFMSYFYRFRSSANSFLSQYEPIVLLLSPLLCLLLAHTIRSFFQLVHDQGLKPTLLGFLINSIKLIPGVKTYIDAQKQKVVDKLQSDSKSKREGWRTELPRAGLRMEVIEKMRDEKRNDVIWQGKCSGTVYIGGSEFDEHFSLINEACSMFAHTNPLHMDVFQSVVRFEAEVVAMTAAILGSKEKSSGGKICGNMTSGGTESILLAVKSSRDYMKSKKGVTRPEMIIPESAHSAYDKAAQYFNIKLWRVPVNKRFQADLKAIRQHINRNTILIVGSAPGFPHGIIDPIEELGDLASSFGICFHVDLCLGGFVLPFARELGYPIPAFDFSVKGVSSISVDVHKYGLAPKGTSIVLYRNHEIRKHQFVAVTEWSGGLYVSPTMAGSRPGGLIAGAWAAMMSLGHEGYLENTKAIMEVSNRIQKGIVEIPELFIIGRPDMTIVAFGSDVLDIFEVNDIMSSRGWHLNALQRPNSVHICVTLQHVAVVEDFLRDLKESVITVKENPGPISGGLAPVYGAAGKMPDRVMVQELLIDFMDGTC 540
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g2000 540 FunFam Sphingosine-1-phosphate lyase 1 391 503 - -
Glsi13g2000 540 PANTHER - 40 540 - -
Glsi13g2000 540 Gene3D - 101 537 - -
Glsi13g2000 540 SUPERFAMILY PLP-dependent transferases 75 501 IPR015424 -
Glsi13g2000 540 Gene3D Aspartate Aminotransferase, domain 1 109 503 IPR015422 GO:0003824
Glsi13g2000 540 Gene3D - 137 404 IPR015421 GO:0003824
Glsi13g2000 540 FunFam Sphingosine-1-phosphate lyase 1 501 539 - -
Glsi13g2000 540 Pfam Pyridoxal-dependent decarboxylase conserved domain 145 445 IPR002129 GO:0016830|GO:0019752|GO:0030170
Glsi13g2000 540 FunFam sphingosine-1-phosphate lyase 1 140 404 - -
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g2000 156 499 Calmodulin-binding Proteins AT5G17330 25.824 3.03e-26 110