Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1973 ATGGCCGCTGTTCCATTCCTTCTCTTACTCACTCTTTCTTTTTCTCCTTATTCCTTCTCCCTCTCAGACACCGAGGCCCTCCTCAAGCTCAAACAATCCTTCAACACTTCTGCTCCTTCTTTATCTTCCTGGCTTCCTGACTCCTCTCCTTGCTCTGCCAAGTGGGAAGGAGTCATTTGTAACCACAACCTTGTCACCGGTTTGCACATCTCCCAATTAGGTCTATCCGGCAAGATTGACGTTCAAGCTCTCAGCCAAATTCCTAGCCTTCGAACAATCAGCTTTATCGACAACTCCTTCTCGGGTCCAATGCCAGATTTCCACAAACTCGGGGCTCTCAAGGGTCTGTATTTAAGCGGCAATCAATTTTCTGGCTCTATTCCTCCTGATTTCTTCAGCCATTTAGGGTCGCTGAAGAAACTCTGGCTTTCCAGGAATAAGTTCTCCGGAAACATACCCGAGTCCTTAACGAAACTACAGTTACTCGTAGAATTGGGCCTGGACAACAATGAATTCTCAGGACCTATCCCCCCATTGAAGCAAGAACTTAGAATATTCAACGTGTCCGTTAACAAATTAGAAGGACCAATCCCCGAGAAATTGTCTAGGTTCAATGCCAGTTTTTTCTGGGGAAATGAAGGGCTATGCGGCAAACCTGTGGAGAAGGCTTGCGATGCGACGGCCAAGGAGTTAGCCCCGGATAAGGGACAAAAAGGCTGGGTGAGCCAGACCATGATGGTGGTGATGGGTTTAATTGCGGTGGCCGTGATTTTTGTATTGATTAGGCCATCAAATCATCCACGCGAGGAAGATTTTAGTGTGCTCAACAGAGAACATGTGGGGGAGGTGGTTCAAGTGCATGTGCCAAGCTCAAACCACAGCAGGGAGTCGGACTCTAGCAAAAAGGGGGGCGAATTGAAGAAAGTGTCCACAAAGAATAATGGGATGGGTGACCTTGTAATGGTGAATGAAGAAAAAGGTGCGTTTGGGTTGCCGGATTTAATGAAGGCCGCCGCAGAGGTTTTAGGAAATGGGGGGATGGGTTCTGCATATAAAGCCGCAATGGGAAATGGGTTGTCGGTGGTGGTGAAGAGAATAAGGGAGATAAACAAAATAGGGAGAGATGCTTTCGACGCTGAGATGAGACGGTTTGGGAGAATACGACACTGCAATATTTTGACACCTTTGGCCTACCACTATCGCAAGGACGAGAAGCTAATTGTGTCTGGTTATATCCCAAAAGGCAGCTTGTTATATGTGATGCACGGTGATAGAGGATCATGCCATGCTGATCTGAACTGGCCTGCTCGCTTGAAGATTGTGCAGGGAATTGCACGAGGCTTGGGCTTCCTTCATTCTGAATTTGGTTCCTACGAACTACCCCATGGAAACCTCAAGTCCAGCAATATTCTGCTGAGTGATGATTACGAGCCACTCCTAAATGACTACGCCTTTCATCCACTGGTCAATCCCAACAGTGCTGCCCAGGCCTTGTTTGCCTACAAAACCCCAGATTACATGCAATACCAGCAAGTCACACACAAAACAGATGTTTATTGCCTGGGAATTATCATTCTTGAAATCATTACCGGCAAATTCCCTTCGCAGTATCATAGCAATGGCAAGGGTGGTACTGATGTCGTGCAATGGGTGTTTACAGCAATTTCCGAGAGAAGAGAGGCTGAATTGATTGATCCTGAGATAGCAAGCGACACAGATTCTCTGAATCAGATGCTCCAACTTCTCCAAATTGGGGCTGCTTGCACCGAGAACAATCCCCACCAACGTCTTAACTTGAGTGAAGCCATTAGAAGGATAGAGGAGGTACAAGTTTAA 1836 0.469 MAAVPFLLLLTLSFSPYSFSLSDTEALLKLKQSFNTSAPSLSSWLPDSSPCSAKWEGVICNHNLVTGLHISQLGLSGKIDVQALSQIPSLRTISFIDNSFSGPMPDFHKLGALKGLYLSGNQFSGSIPPDFFSHLGSLKKLWLSRNKFSGNIPESLTKLQLLVELGLDNNEFSGPIPPLKQELRIFNVSVNKLEGPIPEKLSRFNASFFWGNEGLCGKPVEKACDATAKELAPDKGQKGWVSQTMMVVMGLIAVAVIFVLIRPSNHPREEDFSVLNREHVGEVVQVHVPSSNHSRESDSSKKGGELKKVSTKNNGMGDLVMVNEEKGAFGLPDLMKAAAEVLGNGGMGSAYKAAMGNGLSVVVKRIREINKIGRDAFDAEMRRFGRIRHCNILTPLAYHYRKDEKLIVSGYIPKGSLLYVMHGDRGSCHADLNWPARLKIVQGIARGLGFLHSEFGSYELPHGNLKSSNILLSDDYEPLLNDYAFHPLVNPNSAAQALFAYKTPDYMQYQQVTHKTDVYCLGIIILEIITGKFPSQYHSNGKGGTDVVQWVFTAISERREAELIDPEIASDTDSLNQMLQLLQIGAACTENNPHQRLNLSEAIRRIEEVQV 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1973 611 Gene3D Ribonuclease Inhibitor 133 226 IPR032675 -
Glsi13g1973 611 SUPERFAMILY L domain-like 20 204 - -
Glsi13g1973 611 SUPERFAMILY Protein kinase-like (PK-like) 340 606 IPR011009 -
Glsi13g1973 611 Gene3D Transferase(Phosphotransferase) domain 1 412 611 - -
Glsi13g1973 611 MobiDBLite consensus disorder prediction 294 308 - -
Glsi13g1973 611 Pfam Protein kinase domain 340 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1973 611 ProSiteProfiles Protein kinase domain profile. 336 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1973 611 MobiDBLite consensus disorder prediction 287 312 - -
Glsi13g1973 611 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Glsi13g1973 611 Gene3D Phosphorylase Kinase; domain 1 303 411 - -
Glsi13g1973 611 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 8 610 IPR046959 -
Glsi13g1973 611 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Glsi13g1973 611 Gene3D Ribonuclease Inhibitor 22 132 IPR032675 -
Glsi13g1973 611 FunFam Nuclear pore complex protein NUP107 20 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1973 Glsi-ChrGlsi13 35232615 35234528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1973 1 611 Receptor kinase-like Gene Family AT3G42880 51.420 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi13g1973 Pkinase 2.5e-24 CL0016