Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1969 ATGAAGGCTCCGTCCTGCGTTTACTTGCCTAATTCTGGTGAAGGGGAAAGAAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCATTAGTTTCTTTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAGCAAGTTGCGGCATCTATGCAAAAGGAGGCTGATTTCGTACCTAGTTACCCTAACCTTCCGTCGAATTTGATTTGCATGCTTCACAATGTTGCTCTGCATGCTGATCCTGAAACTGATGAGGTTTATGCACAGATGACTCTTCAACCTGTAAACAAAGATTATTCGATGCAACCTCCATCTCAGGAGCTTGTTGCCAAAGATTTGCATGACAATACATGGACATTCAGACATATTTATCGCGGAATATCATGTCCCTCTGTTGCTGAGGCAAAATTTCTGGTTGATTTTAGAGATGAAAAACAGCAACTTCTTTTAGGTATAAAGCGTGCTAACAAACAACAACCAGCTCTGTCCTCATCAATCATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTGCAAATAACAGTCCATTCACTATATTCTACAATCCAAGGGCCAAACCCCCTGAATTTGTTATTCCATTGGCCATGTACAATAAAGCTATTTATATTCAAGTTTCGCTTGGAATGAGATTTAGAATGATGTTTGAGACTGAGCAGTCAGGAGTGCGCAGATACATGGGTACAATCACTGGGATCAGTGACTTGGATCCTGTGCGATGGAAGAATTCAAAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCAAGCAGAGTTTCAATTTGGGAAATTGAACCTGTGGTGACTCCTTTCTACATTTGCCCCCCTCCATTTTTGAGGCCCAAGTTCCCCAAGCAACCAGGAATGCCAGATGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCTGTGCCCTGGCTCGGAGATGACTTTGGCACGAAGGATGCCTCAAGTTCTATATTTCCAGCTTTGAGTCTAGTGCAGTGGATGAGCATGCAGCAGAATAATCAGTTTTCTGTTGCTCTTTCATCTGATGATCAATCCAAGTTACTGAGTTTTCGAGCCCCTGCACACTCGGCACAAAGGCTTCAATTCAACAAACCTAATTTACCTAACCAAGTCAACCAACAGCAACAGTCTTGTCAACATGCCATTATGAATAATGGGGTAGTTGCTTCCAGTCAGATTCCAAATCAGAGTGTCAAGCAACCGATAACCTACTCTCAGCTTCAGCAGCAGCAACTACTCTCACTCTCGGGCAATATCCCATCCCAGCAAAGAATTCAATCGGCTAGTAAGAACACATTCCCTCTGACATCCTTTTCACAAGATTCACAATTTCAGCAACAGATAGATCAGCAGCAGCAGACACAGTTGCAACAATCTCCATTGCTGCTATTACAGCAAAGCCAGTCACAAAGGGCACCGGAGCAACTACAAGTGACTGAACTCTCTCAGCAAAACCTCTCGGAGCAACAACTGCAGTTACAGTTGCTACAGAAATTGCAGCAGCAGCAACAGCAACTTCTTTCCCCGGCTAGCCCTCTGTTTCAGCCTCAACTGCTACAGCAACAAAACCAGCAACTACCGCCTCAACAGGTTAGCGACAATGCATTCTCTTCCTCAGCTCTGATGCAATCACAACAGCTTCCTGTGAACCAACCCCAGAACACACATAAACCACTTACAACTACCAGAGTGCCTTCGAGTCTTACAGATGGTGATGCCCCATCATGCTCAACCTCACCGTCAACTAACAACGTCAAGATATCTCCTCCAAATCTACTGAAAAGAAACCAACAAATATCATCGGACACATTAGGAGGGAGCTTGGTAGTTGAGCCCACTACTAATCTGATACAGGAGCTTCAGAGTAAGTCTGACATTCAGATCAAACATGAGCTGCCCAGTGTAAAAGGACCTGACCAACTAAAGTATAAAGGGACAATTACTGATCAGCTGGAAGCTTCCTCTACTGGAACATCTTACTGCCTTGATCCTGGTAATTTCCAGCAAAGCTTCCCATTTCCCAACTTCTGCTTGGAAGGGGATGTACCATCACACCCTAGGAACTATCTACCATTTGCCTCTGATATTGATGGACTAACACCGGAAGCTTTACTGTCAAGGGGGTACGATTCTCAAAAGGATCTTCAAAACTTGCTCTCTAATTATGGCAGTGCTCCAAGAGACATTGAAACTGAGCTGTCCACAGCTGCCATCAGCCCGCAGTCATTTGGAGTGCCAAACATGCCTTTTAAGCCTGGTTGCTCAAGCGATGTTGCCATCAATGATACTGGGGTTTTGAATAATGGCATATGGACTAACCAGACTCAACGAATGCGAACGTATACTAAGGTTCAAAAGCGTGGCTCCGTGGGAAGATGTATTGACGTCACCCGTTACAAGGGATATGATGAGCTGAGGTTTGATTTGGCTCGTATGTTTGGGATCGAAGGGCAGCTAGAAGATCCTCAAAGGACTGACTGGAAATTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCATGGGAGGAATTTGTAAGCTGTGTACAGAGCATAAAGATACTGTCATCGGGTGAGGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTAATGTTCCAATCTCCAATCAAGCTTGTAGTGGGACAGACAGTGGCAACGCATGTAGAGGACAGGATGATGATAACTCTGCTACTTCATTCAATCGGTAA 2802 0.4465 MKAPSCVYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFVPSYPNLPSNLICMLHNVALHADPETDEVYAQMTLQPVNKDYSMQPPSQELVAKDLHDNTWTFRHIYRGISCPSVAEAKFLVDFRDEKQQLLLGIKRANKQQPALSSSIISSDSMHIGILAAAAHAAANNSPFTIFYNPRAKPPEFVIPLAMYNKAIYIQVSLGMRFRMMFETEQSGVRRYMGTITGISDLDPVRWKNSKWRNLQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFLRPKFPKQPGMPDDESDIENAFKRAVPWLGDDFGTKDASSSIFPALSLVQWMSMQQNNQFSVALSSDDQSKLLSFRAPAHSAQRLQFNKPNLPNQVNQQQQSCQHAIMNNGVVASSQIPNQSVKQPITYSQLQQQQLLSLSGNIPSQQRIQSASKNTFPLTSFSQDSQFQQQIDQQQQTQLQQSPLLLLQQSQSQRAPEQLQVTELSQQNLSEQQLQLQLLQKLQQQQQQLLSPASPLFQPQLLQQQNQQLPPQQVSDNAFSSSALMQSQQLPVNQPQNTHKPLTTTRVPSSLTDGDAPSCSTSPSTNNVKISPPNLLKRNQQISSDTLGGSLVVEPTTNLIQELQSKSDIQIKHELPSVKGPDQLKYKGTITDQLEASSTGTSYCLDPGNFQQSFPFPNFCLEGDVPSHPRNYLPFASDIDGLTPEALLSRGYDSQKDLQNLLSNYGSAPRDIETELSTAAISPQSFGVPNMPFKPGCSSDVAINDTGVLNNGIWTNQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRFDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSGEVQQMSLDGDLGNVPISNQACSGTDSGNACRGQDDDNSATSFNR 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1969 933 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 104 526 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi13g1969 933 ProSiteProfiles PB1 domain profile. 806 899 IPR000270 GO:0005515
Glsi13g1969 933 Pfam AUX/IAA family 803 892 IPR033389 -
Glsi13g1969 933 SUPERFAMILY CAD & PB1 domains 819 884 - -
Glsi13g1969 933 Gene3D - 87 161 IPR015300 -
Glsi13g1969 933 MobiDBLite consensus disorder prediction 567 616 - -
Glsi13g1969 933 Pfam Auxin response factor 186 268 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi13g1969 933 Gene3D - 801 895 - -
Glsi13g1969 933 Gene3D - 223 294 - -
Glsi13g1969 933 FunFam Auxin response factor 223 295 - -
Glsi13g1969 933 FunFam Auxin response factor 801 895 - -
Glsi13g1969 933 MobiDBLite consensus disorder prediction 913 933 - -
Glsi13g1969 933 SUPERFAMILY DNA-binding pseudobarrel domain 102 189 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1969 Glsi-ChrGlsi13 35207924 35214137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1969 1 933 B3 DNA Binding Superfamily AT1G19220 54.720 0.0 1019