Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1957 ATGAGTCTTGAAGGCCCAGTCAATCGCAAAACAAGATCAAGCAAGAAGCTGAAATTGGTGGACGAAATGGAAATTCCCCCTCCTATTGAGGTTGTTGATGTTGAAGCTTTTTGCTTCACACCCATCTCGAACAAGGGCACCAGCAAATCCAATGCAATCTCTGTTGAGCAGTACACCCACGACAGAGACCCTCACCTTGCGGTCATGGCTTCTGTGGTTCAAGCAAAGTCTGCTCCGGAAATCCTCATCGACCTTTCTGACGGCGATGATGACGACGAGGTGAGAGTTCTTCGGTTTAAGCCTGAAAATACTCCCTTTGGGAAGCGTAGAAACTCCAGAATTCCCCTTATTTCCACTACTGAAACAGGGGAATCTTCCAATTCTCCACCATTTGTTTGTGAAATTTGTACTGAAACCAAGACTGCAAATGAGTCATTTAGCATCGGCGGTTGTTCTCACGCTTATTGCACCGAGTGTATGATTAGGTATGTGGGATCAAAGCTACAAGAAAATGTTGTTAACATTCGGTGCCCGGTATCTGAGTGTAGGGGATTGTTGGAGCCTGAGGATTGTCGTCCAATTCTTCCTCCGGAAGTGTTTGATAGGTGGGGTAATGCCTTGTGTGAGGCTGTAATACTTGGCGCTGAAAAGTTTTACTGCCCATATAAGGACTGCTCTGCGCTACTGATTGATGATGGAGGAGAGGTGATCAAGGAGTCAGAGTGTCCAAATTGTAGGAGACTCTTCTGCGTGCAGTGTAAGGTGCCTTGGCATTCGGGAATTGATTGCGCGGAGTTTCAGAAATTGAGCAAGGACGAGAGAGAGAGTGAAGATATTATGCTTATGCAACTTGCTCAGAACAACAAGTGGAGGAGGTGTCCTAAGTGCAGGTTTTACGTTGAGAAATCTTCTGGCTGTATGTATATGAGATGCAGGTGTGGAATTGCCTTCTGTTACAACTGTGGAACTCTCGCTAAAGATAACTCCCATAATTGCTATAAGTGTAGACGCTGA 1014 0.4566 MSLEGPVNRKTRSSKKLKLVDEMEIPPPIEVVDVEAFCFTPISNKGTSKSNAISVEQYTHDRDPHLAVMASVVQAKSAPEILIDLSDGDDDDEVRVLRFKPENTPFGKRRNSRIPLISTTETGESSNSPPFVCEICTETKTANESFSIGGCSHAYCTECMIRYVGSKLQENVVNIRCPVSECRGLLEPEDCRPILPPEVFDRWGNALCEAVILGAEKFYCPYKDCSALLIDDGGEVIKESECPNCRRLFCVQCKVPWHSGIDCAEFQKLSKDERESEDIMLMQLAQNNKWRRCPKCRFYVEKSSGCMYMRCRCGIAFCYNCGTLAKDNSHNCYKCRR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1957 337 Gene3D - 260 337 - -
Glsi13g1957 337 SUPERFAMILY RING/U-box 208 268 - -
Glsi13g1957 337 ProSiteProfiles TRIAD supradomain profile. 129 337 IPR044066 -
Glsi13g1957 337 CDD BRcat_RBR_unk 214 266 - -
Glsi13g1957 337 SMART ibrneu5 201 263 IPR002867 GO:0008270
Glsi13g1957 337 SMART ibrneu5 273 335 IPR002867 GO:0008270
Glsi13g1957 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 215 IPR013083 -
Glsi13g1957 337 SUPERFAMILY RING/U-box 128 210 - -
Glsi13g1957 337 FunFam RBR-type E3 ubiquitin transferase 128 214 - -
Glsi13g1957 337 ProSiteProfiles Zinc finger RING-type profile. 133 181 IPR001841 -
Glsi13g1957 337 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 88 336 IPR031127 GO:0004842|GO:0016567
Glsi13g1957 337 Pfam IBR domain, a half RING-finger domain 213 263 IPR002867 GO:0008270
Glsi13g1957 337 Pfam IBR domain, a half RING-finger domain 281 332 IPR002867 GO:0008270
Glsi13g1957 337 FunFam RBR-type E3 ubiquitin transferase 265 337 - -
Glsi13g1957 337 CDD Rcat_RBR_unk 289 323 - -
Glsi13g1957 337 SUPERFAMILY RING/U-box 274 336 - -
Glsi13g1957 337 ProSitePatterns Zinc finger RING-type signature. 151 160 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1957 Glsi-ChrGlsi13 35067015 35070315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1957 133 323 C3H Transcription Factor Family AT2G19610 30.846 2.47e-23 98.2