Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1952 ATGAACCATGAGGAACGAAGGATTTTGAATGCAGCAGATGACAAGCCCACACCTAATGTTACGGTGGTGCAAGATGGCAGCGGAGCCTTCAAAACCATCTCTGAAGCCTTAGCAGCCGTGCCCCAAAAATATCATGGACGGTGTGCTCCTAATCCTTTGGTTGTAGGAGGATTTTTGGGGAAAGCAATGGGATTCAGGAACACAGCTGACCCAGAAAAGCATCAAGCAGTGGCAGCCAGAGAACCAATGGACAATCAACAGAACATTGTCACGCCTAAGGGGAGAATAGACAAGCGCCAAGCCACTGGACTTGTTTCACAAAAATGCGTGATTAGGCCTGATGACAATCTGAGTGCTGTAAAAGACCAAATCAAGAGCTACCAATACCCAAGAACCGTTATAATTGAATCCCAAATGGAAGATATAATTCACCCTGATGGCTGGCATCCCTGGAAGGGACAGTTTGCTCTCAGGACACTTTATTATGCTGAGTACAACAACACAGGAGGTAGTGCCACCACCAAGAGCAGGGTGATGTGGCCTGGCAACAGAGTCATCAGCAAGCAAGTTACTAGCAATTATACGGTTAAGTCTTTCTTAAAAGGGAGTTGGATGACTGGCACAGGCGTACCTGTTCAGTGA 642 0.4688 MNHEERRILNAADDKPTPNVTVVQDGSGAFKTISEALAAVPQKYHGRCAPNPLVVGGFLGKAMGFRNTADPEKHQAVAAREPMDNQQNIVTPKGRIDKRQATGLVSQKCVIRPDDNLSAVKDQIKSYQYPRTVIIESQMEDIIHPDGWHPWKGQFALRTLYYAEYNNTGGSATTKSRVMWPGNRVISKQVTSNYTVKSFLKGSWMTGTGVPVQ 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1952 213 PANTHER PECTINESTERASE 56 80 - -
Glsi13g1952 213 Pfam Pectinesterase 79 202 IPR000070 GO:0030599|GO:0042545
Glsi13g1952 213 Gene3D - 78 213 IPR012334 -
Glsi13g1952 213 SUPERFAMILY Pectin lyase-like 17 206 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1952 Glsi-ChrGlsi13 35040838 35041920 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1952 1 213 Carbohydrate Esterase AT2G26450 33.945 5.22e-48 164