Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1950 ATGGCTCCTTCTTCAACAAAAGGCCTGACGCCAATACCCACCATCACGTTCCTATTCTTGTTGATGCTTTGCACCTCATTTGGTGCCGGTGTTCGCGTTGATCTCGTGAGGTCGGAGTTCTTGAAGGTTTCCTCTTCTGAATTCGTTGGCTCTGTGAGATCAATCATTGACGTTTTACAACAGGTTGGTTCCATTTTGTCCAAGTTTAGCGATGTTTTTGGAGATTCTCGTGTGTCAAATGCAATTTCGGACTGTCTCGAGTTGCTCGACTTGTCTTCTGACGACCTCAGCTGGTCTGCATCAGCTACTCAGAGTCCAATAGGCAAGTATAACAGTACAGGAAACCTGAGCTCTGATTTGAGGACATGGTTAAGCGCCGCACTTGCGAATCCGGAGACATGCATGGACGGATTTGAAGGCACCAACGGCATTGTGAAAGGTCTAATATCCAGTGGCCTTGGGCAAGTGACCTCATTGGTCCAGCAGCTCCTCACCCAGATTCACCCTGTTTCGGATCACTTTTCCACCAGCAACAGCAGGGGCCGATTTCCTCCCTGGATTAAACCAAAGGATCGGAAGCTACTACAAGCAAATGGGGTGGCCGTAGACGTTGTAGTAGCCGCCGATGGGACAGGAAATTACACTACGGTGATGGATGCAGTGCTAGCAGCACCGGACTATAGCATGAAACGCTATGTAATATACATAAAAAGGGGAGTATACACTGAGAACGTGGAGATCAAAAGGAAGAAATGGAATCTCATGATGATTGGAGATGGTATGGATGCCACTGTTATCTCCGGCAACCGGAGTTTCATCGATGGGTGGACCACATTCCGGTCGGCTACTTTTGCTGTAAGTGGTAGAGGGTTCATAGCGCGAGATATCTCCTTCCAGAACACTGCAGGACCCGAGAAGCACCAGGCAGTAGCACTAAGATCCGACTCTGACCTCTCTGTCTTCTACCGATGTGGCATATTTGGTTACCAAGACAGCCTATATACCCACACGATGCGTCAGTTCTATAGAGAATGCACCATCAGCGGCACTGTGGATTTCATCTTCGGTGATGCCACTGCTGTGTTCCAAAACTGCCAAATGCTTGCAAAGAAAGGGTTGCCAAATCAAAAGAACACCATCACGGCTCAAGGACGAAAGGACCCAAATGAACCGACAGGTTTCTCCTTCCAATTCTGCAACATCTCTGCAGATTCTGACCTCTTACCCTCAGTTAACTCCACCCAAACATACCTTGGCAGACCCTGGAAGACGTATTCACGAACCGTTTTCATGCAGTCCTATATGAGTGATGTGTTAAGGCCAGAAGGGTGGCTAGAGTGGAATGGAGATTTTGCTTTGGACTCATTGTACTATGCTGAGTATATGAATTCTGGACCAGGAGCTTCAGTAGGAAACCGTGTGAAATGGCCTGGCTACCAAGCATTGAATGATTCTAGCCAGGCTAGTAACTTTACGGTTACCCAATTTATTGAGGGCAATCTGTGGTTACCCTCAACAGGTGTAGCCTACACTGCGGGATTGGGCATTTAA 1551 0.4784 MAPSSTKGLTPIPTITFLFLLMLCTSFGAGVRVDLVRSEFLKVSSSEFVGSVRSIIDVLQQVGSILSKFSDVFGDSRVSNAISDCLELLDLSSDDLSWSASATQSPIGKYNSTGNLSSDLRTWLSAALANPETCMDGFEGTNGIVKGLISSGLGQVTSLVQQLLTQIHPVSDHFSTSNSRGRFPPWIKPKDRKLLQANGVAVDVVVAADGTGNYTTVMDAVLAAPDYSMKRYVIYIKRGVYTENVEIKRKKWNLMMIGDGMDATVISGNRSFIDGWTTFRSATFAVSGRGFIARDISFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFYRECTISGTVDFIFGDATAVFQNCQMLAKKGLPNQKNTITAQGRKDPNEPTGFSFQFCNISADSDLLPSVNSTQTYLGRPWKTYSRTVFMQSYMSDVLRPEGWLEWNGDFALDSLYYAEYMNSGPGASVGNRVKWPGYQALNDSSQASNFTVTQFIEGNLWLPSTGVAYTAGLGI 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1950 516 FunFam Pectinesterase 197 514 - -
Glsi13g1950 516 PANTHER PECTINESTERASE 67 504 - -
Glsi13g1950 516 SMART PMEI_2 44 166 IPR006501 GO:0004857
Glsi13g1950 516 CDD PMEI-like_4 14 171 - -
Glsi13g1950 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 45 169 IPR035513 -
Glsi13g1950 516 Pfam Pectinesterase 203 500 IPR000070 GO:0030599|GO:0042545
Glsi13g1950 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 161 IPR035513 -
Glsi13g1950 516 Gene3D - 201 515 IPR012334 -
Glsi13g1950 516 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Glsi13g1950 516 Pfam Plant invertase/pectin methylesterase inhibitor 63 151 IPR006501 GO:0004857
Glsi13g1950 516 SUPERFAMILY Pectin lyase-like 200 513 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1950 Glsi-ChrGlsi13 35036094 35038593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1950 14 514 Carbohydrate Esterase AT3G43270 65.504 0.0 721