Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi13g1947 | ATGGGTTTCTGTGTAGAGGAGTCAATTTCGGGTTTGGCAATAGGCCAGGCAATATATGAGGCAGCTCTAATAATTGCAGTTCTGAGATGGGTAATTTGCTGGGTTTTCCGAGTAATCAAAGATAGGAGGACAGAATCCCTTGAGACCCCAACTGATGGCTCTTCATCTTCTACTTGTTGTTCCCGGATGATAAGAGACAGCAGTCTGACATTAACGACCTTTGGTGAAATGGTGGAGAGGGTACCAGAAACAGAGGACACGTGTGCTGTGTGCTTGAACCAGTTAAGAATGGAGGATGAAGTTAGGGAGCTCGTGAATTGTTACCATGTATTCCACAGGGAATGCATAGACAGATGGTTGGATCATGATGAGGACAATCACAATCCGACTTGCCCACTGTGCAGGGCCCCTCTGCTGACTTGGTATTGCTCATCAGAAAGCTCAAGCTGTGTGGGTAGGCCACCCCCTCAGCCTAGCTGGGCTGTGGAGAGACTATTGTATCTGTTTGGGGACGATCTGCCACCTTGTTAA | 531 | 0.4783 | MGFCVEESISGLAIGQAIYEAALIIAVLRWVICWVFRVIKDRRTESLETPTDGSSSSTCCSRMIRDSSLTLTTFGEMVERVPETEDTCAVCLNQLRMEDEVRELVNCYHVFHRECIDRWLDHDEDNHNPTCPLCRAPLLTWYCSSESSSCVGRPPPQPSWAVERLLYLFGDDLPPC | 176 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi13g1947 | 176 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 139 | IPR013083 | - | |
| Glsi13g1947 | 176 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 22 | 172 | - | - | |
| Glsi13g1947 | 176 | SUPERFAMILY | RING/U-box | 83 | 141 | - | - | |
| Glsi13g1947 | 176 | SMART | ring_2 | 88 | 134 | IPR001841 | - | |
| Glsi13g1947 | 176 | ProSiteProfiles | Zinc finger RING-type profile. | 88 | 135 | IPR001841 | - | |
| Glsi13g1947 | 176 | Pfam | Ring finger domain | 86 | 135 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi13g1947 | Glsi-ChrGlsi13 | 35002779 | 35003309 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi13g1947 | 1 | 173 | C3H Transcription Factor Family | AT5G20885 | 48.925 | 7.26e-44 | 142 |