Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1929 ATGCACTCCTGGGCCTTAAAGATCTCATTTGAAACAATTGCAGTTGAGACTGCAAGGCAAGCCAGCCAGCCATCTTCCTGGGTGGGACTCGCTTTCTCATTTACTCATTCATTAACCGAGCCATTCCTTCATACTATTAAAGTGACATCACATTCTGGAGGAACCTCGTCCTTTAAGGGGTTTGCTATTAAGCACTTCCTCCAGAAACAGGGTCGGCGCATTGCTGCGACCTTCTGTTGTTTAGCGAAGAGGGACAGGATTGGTCTGAGAAGGTCCATTTCAGATTGGATACAAGGATGCATTTATGCAATTGAGAAAACCCAGATTAGGCCATTAGGGTCGTGGACAGATATATTTGGCATCGGCAAAATGGCATCAGGTCTGAATTCAGGACTGTCCCAGAAAACATTTGTTTTTGGTTTGAAAGTGTGGGTATTAATGGGAATAACAGTTGGTTTGTTCATTATAATCATTCTTGTGGTGTTATCAATATGTCTTACATCACGAAAGAGATCCAGAAGAGTCAATGGCATGCTTCCCCTTAGCCATATGTTATCTGTTTCGGAAGAGATCAAAGAGATTAGAGTTGATCAAGTTTCAGCTAATAACCATTTGCAAAATGGTGCTTTTATGAGTCTGAATGACAAATTTAGTGACAGGGAGTCTGAAAAAGTTTTGATCCAAACAAAATATGGGGATAACAGTAGTCAATCAGGCTCATTCAATCATATAGAGAAAGATGGCGCTGGCTCTCAATCAGGTGAAGAAAGCGGTGCTATGACCATTTCTGCTTACAGGTCATCTTTACATCCTATAACTGCGCCATCCCCTTTATCTGGTCTGCCTGAGTTCTCTCGCCTCGGCTGGGGGCACTGGTTTACATTAAGGGACCTAGAACATGCAACAAACAGGTTTTCAAAAGACAATGTTATAGGTGAAGGTGGATATGGAGTTGTTTATCGAGGTCAGCTAATCAATGGGAATCCCGTGGCTGTTAAAAAGCTTCTCAATAATTTAGGACAAGCTGAGAAGGAATTTAGGGTGGAAGTTGAGGCTATTGGTCACGTGCGCCATAAGAACTTGGTTCGACTTCTTGGGTATTGCATTGAAGGCACTCACAGGTTGTTGGTTTATGAGTATGTTAACAATGGCAATTTAGAGCAATGGCTTCACGGAGCTATGCGGCAGTATGGGTATCTGACTTGGGATGCGCGAATTAAAATTCTCCTTGGCACAGCTAAAGCGCTGGCTTACTTGCACGAGGCAATTGAACCAAAAGTTGTGCATCGGGACATTAAGTCAAGCAATATTCTAATTGATGATGACTTCAATGCCAAAATATCTGACTTTGGGCTGGCTAAGTTGCTGGGTGCTGGAAAAAGTCATATTACAACTAGAGTAATGGGTACTTTTGGATATGTTGCTCCAGAATATGCCAATTCGGGCTTGCTAAATGAGAAAAGTGATGTTTATAGCTTTGGGGTATTGCTTCTTGAAGCAATTACTGGAAGAGACCCAGTGGATTATGGTCGACCAGCAGCTGAGGTAAATTTGGTTGATTGGCTCAAGATGATGGTAGGAAGCAGGCGTTCAGAAGAGGTGGTCGACCCCAACATTGAGACTAGGCCATCAACAAGTGCCCTTAAACGAGCCCTTTTGACTGCTTTGAGGTGCGTTGATCCAGATGGTGAAAAAAGACCAAAGATGAGTCAAGTTGTCCGCATGCTTGAATCAGAAGAATATCCCATACCTCGAGAGGATCGAAGACGCCGTAGAAGTCAGGCAGGAAACATAGAGGTGGAGGCTCAGAAGGAGACTTCAGATACAGATAAGAGTGACAATCCAGATTACAGGTCAAATGGCAGAAGGAACCAACGGGCTTAG 1884 0.4342 MHSWALKISFETIAVETARQASQPSSWVGLAFSFTHSLTEPFLHTIKVTSHSGGTSSFKGFAIKHFLQKQGRRIAATFCCLAKRDRIGLRRSISDWIQGCIYAIEKTQIRPLGSWTDIFGIGKMASGLNSGLSQKTFVFGLKVWVLMGITVGLFIIIILVVLSICLTSRKRSRRVNGMLPLSHMLSVSEEIKEIRVDQVSANNHLQNGAFMSLNDKFSDRESEKVLIQTKYGDNSSQSGSFNHIEKDGAGSQSGEESGAMTISAYRSSLHPITAPSPLSGLPEFSRLGWGHWFTLRDLEHATNRFSKDNVIGEGGYGVVYRGQLINGNPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQYGYLTWDARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYGRPAAEVNLVDWLKMMVGSRRSEEVVDPNIETRPSTSALKRALLTALRCVDPDGEKRPKMSQVVRMLESEEYPIPREDRRRRRSQAGNIEVEAQKETSDTDKSDNPDYRSNGRRNQRA 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1929 627 Gene3D Phosphorylase Kinase; domain 1 288 380 - -
Glsi13g1929 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Glsi13g1929 627 FunFam Putative receptor-like serine/threonine-protein kinase 381 592 - -
Glsi13g1929 627 ProSiteProfiles Protein kinase domain profile. 305 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1929 627 FunFam Putative receptor-like protein kinase 287 380 - -
Glsi13g1929 627 ProSitePatterns Protein kinases ATP-binding region signature. 311 334 IPR017441 GO:0005524
Glsi13g1929 627 Gene3D Transferase(Phosphotransferase) domain 1 381 592 - -
Glsi13g1929 627 MobiDBLite consensus disorder prediction 577 627 - -
Glsi13g1929 627 SMART serkin_6 305 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1929 627 MobiDBLite consensus disorder prediction 232 247 - -
Glsi13g1929 627 MobiDBLite consensus disorder prediction 232 257 - -
Glsi13g1929 627 Pfam Protein kinase domain 306 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1929 627 CDD STKc_IRAK 311 577 - -
Glsi13g1929 627 SUPERFAMILY Protein kinase-like (PK-like) 289 584 IPR011009 -
Glsi13g1929 627 PANTHER OS01G0323000 PROTEIN 127 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1929 Glsi-ChrGlsi13 34912661 34918215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1929 140 579 Trihelix Transcription Factor Family AT1G70460 39.644 9.92e-95 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Glsi13g1929 Pkinase 4.5e-48 CL0016