Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1927 ATGGAGGCCAAATTTGCGGGGGAGAATCAGTATGTCTGTGGACGGGTGATGCCAAAAGTGAAGGCAGTTGGGAAGAGGACTTTGGAGTGGGATTTGAATGACTGGAAGTGGGACGGCGATCTTTTCACAGCTGGTCCATCAGATCGTAGGAGTGGGCAGTTTTTGCCAGTTGATCCTGAAATTTCTGCGAAAGCTAAGATATCTAACAGTTTGTCTTCTGCTAGTGCTTGGGATGATGCCAAACCAGATAAAGGAAAGAGAGTAATGGAGAAAAGGAAGAGAGGTGTTATAGGTGGAGGGGAAGAGCTGAATAATGAAGCCGGTTGTCCTAATTTAAACCTTGGGAGTCAAATTTACCCTATCGTGGAAGGCGAGAAAAACAGTGGCAAGAAGACAAAGATTGCAGTTTGTCAGGTCGAAGATTGTAGGGCTGACCTTAGTGATGCAAAAGATTACCACCGTCGGCATAAGGTTTGTTATATGCATTCTAAAGCTAGTACAGCAGTGGTGGCAAATGTTATGCAACGTTTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTCGACGATGGGAAGAGAAGTTGTCGTAGGCGTCTAGCAGGCCACAATAGGAGGAGGAGGAAAACGCATGATGCTGTACTTAAAGCAGGCTCCCTGAACGATGAAAGGGACAGTAACTATCTGTTAATGAGTTTGCTCCAGATACTGTCCAACATGCACTCAAATGGCTCAGATCATACAAGGTACCAGGATATTCTCTCTCATCTCCTAAGGAACCTGGCCAGCCTGACTGGAAGGAACACAGCCTCCTTATTCGAAGGAACTCAAGGTTTGCCCAAACTAAATTCGAACGGCCCTGAGTCCTCCCGACCTTCTGGTTCTTCTGTCGAGATGGATAATGTGCTTCTGTCGAGGGATAGCCTTCCACCCAAATTAGTTGGAGCAGAGACTAAAGTCGGAAGGAGAGGCTTACATAACATTGACCTGAATAACATATACGATGATATACAGAATGATGTTGAGAATCCTAGCAACCCTCATCCTCCTGTCACTTTAGGGATTGGGTCTCTTGATCATCCTTCTTGGTTACAATGTGACTTTCTCAAGTCCAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCTACCCAGTCACCGTCTAGTTCCAGTGGAGAAGCTCAGAGTCGCACTGATCGAATTGTTTTCAAACTCTTTGGCAAGAATCCAAATGATTTTCCGCTCGTTCTCCGATCGCAGATTCTCAACTGGTTATCCCACAGTCCCACAGAGATAGAGAGCTATATAAGGCCAGGCTGTATCATATTAACTGTGTATCTCCGTCTAGAAAAATCTGTGTGGGATAAGCTCTCTTATAATCTAGGAACTAGTTTGAGAAAGCTTCTTGCTGCATCAAATGATTCTTTCTGGAGAACAGGATGGGTGTATATAAGGGTGCCGCATTCTGTAGCTTTTCTATACAATGGTTTGTGCTCTCTCACTGGTTGTTGTGTGGAAGATCATGGTCTTAGCAGCTGTTCCTTTCCATTTATTGTTGCAGATAAAGAAATTTGTTCAGAGATCTGTAAGCTGGAGAGTGTGATCGAGGCAGCTCATGACAGTCAGATAAAAAGCAAACAAATGGAAGAAAAGGCTCGAGCGTTGGATTTCATTCAAGACATTGGTTGGCTCCTTCATAGAAGTCGTGTGAAAGTTAAGCTAGGTCCTATGGCACCTGTCCAAGACCTATTCGATTTGCATCGGTTCATGGGGCTTGTGGAGTTCTCCATGGACCACGATTGGTGTGCTGTGATGAAAAAACTCTTGGACATTATGTTTGAGGGTGGTGTTGATGCAGCAGAGTATACCTGCATTGAGTTTGCATTGTTAGACATGGGTCTTCTCCACAGAGCTGTAAAGAGAAAATGTAGGCCTATGGTGGAACTACTTTTAAAATTTGTGCCAGTTAGAACTTTAGATGAAAAGGCCTCTGACAGATTCTTATTTAAACCTGATACTGTTGGGGCTGCTGGGTTGACTCCCCTTCATGTTGCAGCAAGTATGAATGAGTCGGAGAATGTGTTGGATGCATTAACTGATGATCCAGGAATGGTGGGAATTGAGGCATGGCTAGGTGCCCAGGACAATGCAGGTTTGACACCCAACGCATATGCATGCCTGCGGGGATACTACTCCTACATTGAACTCGTACAGAGGAAAAAGAGCAAGAGAAGTGAAAGTCAACATGTGCTTGATATACACAGTGACATAAAGCAGAAGCAGTCAGATGGGCATAGCTTATCTGAAGTTGTAAGTTTGAGGAGTGAGAATATTGAGTGTGATGCATGCAAGCGGAAGCTCATGCGAAGGAGTTTGGTTTATAGGCCGGCAATGCTGTCTGTGGTGGCCATTGCAGCAGTGTGCGTTTGTGTGGCTTTGCTCTTCAAAAGCTCACCCACAGTTTCCTTTGTGTTGCAGCCCTTCAGATGGGAATCATTGGGATACGGCTCATTCTAA 2523 0.4483 MEAKFAGENQYVCGRVMPKVKAVGKRTLEWDLNDWKWDGDLFTAGPSDRRSGQFLPVDPEISAKAKISNSLSSASAWDDAKPDKGKRVMEKRKRGVIGGGEELNNEAGCPNLNLGSQIYPIVEGEKNSGKKTKIAVCQVEDCRADLSDAKDYHRRHKVCYMHSKASTAVVANVMQRFCQQCSRFHVLQEFDDGKRSCRRRLAGHNRRRRKTHDAVLKAGSLNDERDSNYLLMSLLQILSNMHSNGSDHTRYQDILSHLLRNLASLTGRNTASLFEGTQGLPKLNSNGPESSRPSGSSVEMDNVLLSRDSLPPKLVGAETKVGRRGLHNIDLNNIYDDIQNDVENPSNPHPPVTLGIGSLDHPSWLQCDFLKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKNPNDFPLVLRSQILNWLSHSPTEIESYIRPGCIILTVYLRLEKSVWDKLSYNLGTSLRKLLAASNDSFWRTGWVYIRVPHSVAFLYNGLCSLTGCCVEDHGLSSCSFPFIVADKEICSEICKLESVIEAAHDSQIKSKQMEEKARALDFIQDIGWLLHRSRVKVKLGPMAPVQDLFDLHRFMGLVEFSMDHDWCAVMKKLLDIMFEGGVDAAEYTCIEFALLDMGLLHRAVKRKCRPMVELLLKFVPVRTLDEKASDRFLFKPDTVGAAGLTPLHVAASMNESENVLDALTDDPGMVGIEAWLGAQDNAGLTPNAYACLRGYYSYIELVQRKKSKRSESQHVLDIHSDIKQKQSDGHSLSEVVSLRSENIECDACKRKLMRRSLVYRPAMLSVVAIAAVCVCVALLFKSSPTVSFVLQPFRWESLGYGSF 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1927 840 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 511 621 IPR044817 GO:0003677
Glsi13g1927 840 MobiDBLite consensus disorder prediction 370 398 - -
Glsi13g1927 840 SUPERFAMILY SBT domain 135 213 IPR036893 GO:0003677|GO:0005634
Glsi13g1927 840 Pfam SBP domain 137 210 IPR004333 GO:0003677
Glsi13g1927 840 SUPERFAMILY Ankyrin repeat 636 739 IPR036770 -
Glsi13g1927 840 Gene3D - 127 198 IPR036893 GO:0003677|GO:0005634
Glsi13g1927 840 ProSiteProfiles Zinc finger SBP-type profile. 134 211 IPR004333 GO:0003677
Glsi13g1927 840 FunFam Squamosa promoter-binding-like protein 14 128 198 - -
Glsi13g1927 840 Gene3D - 619 765 IPR036770 -
Glsi13g1927 840 MobiDBLite consensus disorder prediction 276 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1927 Glsi-ChrGlsi13 34901676 34906480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1927 1 839 SBP-box Gene Family AT3G60030 39.189 1.38e-163 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi13g1927 SBP 1.1e-28 No_clan