Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1922 ATGGCTGAGAGCAGAAAATATATCCTAAATCAACAATTAGACCTTGATGAGATACTACGAGAAGCAGAGCACCGTTGGCTTCGACCTCCTGAAATTTGCGAAATACTTCGCAATTTTCAGAAATTTGAGTTGACAGCAGATCCACCTGTTAGACCTCCAGCTGGATCACTATTCTTGTTTGATCGAAAGGCACTTCGTTACTTTCGCAAAGATGGTCACCGATGGCGGAAGAAAAAAGATGGGAAGACTGTGAAAGAAGCTCATGAAAAGTTGAAGGCTGGCAGTGTGGATGTTCTGCATTGTTACTATGCTCATGGGGAGGATAATGAGAACTTTCAACGGCGAAGTTATTGGATGCTTGATGAGCAATTAGAGCACATTGTCCTTGTTCATTACCGAGAAGTTAAAGAGGGCTACAAGTGTGGCATCTCACAGTTGCCTATACATCCAATACCCTTGGTTGGTAGCCTTAAGAGTAGTTCTGCACCTTCCTCTGCACAAGCAAATTCACCTGTTTCTGTAGCCCAAACATCTTATGCATCAAGTGTAAATAGAGTTGATTGGAATGGAGGAACACTATCTTCAGAGTATGAGGATGTGGACTCTGCGATTGGTCATCAAACCTCATCTCATACTCAACCTGTCAGCAGTTCCCTACCTCATAGTACACCTCTGCTCTCGCATGAAGTCAATGGATTTTCTCAGTTGTCAAGGAGGCCCTATAATTCATGGTCATCTTCTCTCCCTAGCTTGTATCTTGGCACTTGCTCATCTCCATGGGCATTAAATGAGAACTCTAGCAGAAACATAGTTAATATGCATGATAGAAATCTTCATGTTGAAGGATCCATTGAAGGCTCCAAAGTTGATTTCATTGATCATAAGCTAGGAGATGTAAGGTTAGACCCAGGTAGCACAATCCAAGATGCTGTAACTTGCAGAGATAGGCCGTTCACTTACATGTATGTGCAGCCAATTACAGGAGTTTCAAAGACAGTAAATCAGGCACAAAAGGAGCATGATTTAAATTCAGTTCATACCACCCATGATCATACTGATCATCCAGCTGTGGCATCTTCAACAGTCATAGTTGAACAAAAACTTAAAAATGGAAATACATATAATGGTGAATCAGAACATTTTGAATCTGGGGAGCTGAAGAAACTTGATAGTTTTGGAAGGTGGATGGATAAGGAAATTGGTGGAGACTGTGATGATTCCTTGATGGCTTCAGACTCTGGCAATTATTGGAATACACTTGATGCTCATAATGGGGATAAGGAAGTGTCCAGTTTACATATGCAGTTGGATATGGATTCATTGGGCCCTTCTCTTTCCCAAGAACAACTGTTTAGCATCCATGAGTTTTCTCCAGATTGGGCATATGCTGGGGTTAAAACTAAGGTTTTAATAGTTGGCACATTTCTGGGGAGTAAGAAGCTTTATGCTGATAAAAAGTGGGGATGTATGTTTGGTGAAATTGAGGTTTCTGCTGAAGTTCTGACTGATAATGTCATACGGTGTCAGACTCCTCTGCATTCACCTGGTCGTGTTCCATTCTACGTTACCTGCAGTAATAGATTAGCCTGCAGCGAGGTGAGAGAATTTGAATATCGTGAAAACCCAACTATAGGTCCTGTGGGTGTTAAAATCACACCAGAAGATGAAGTTCGCTTTCAAGTGCGACTACTAAAGTTAGTAGACTTGGGACCTGACAAGAAGTGGCTGAACTGCTCTGTTTCTCAATGTGAGAAATGTAAGCTTAAAGGAACAATGTATTCAATGAGAGATGATAGTGGAATATTTGAACAAACATCAAAGATCAATGAAAGTGACTACGGGAACCCTAGAGATGTGTTATTACAGAGATTCCTGAGAGACAAGCTTTATGAGTGGCTGGTGTTTAAGGTCCATGAAGAAGGAAAAGGGCCGCACGTGTTGGATAACGAAGGCCAAGGAGTAATACATTTGGCTGCTGCTCTTGGTTATGCGTGGGTTATGGGCCCCTTAGCTGCTGCTGGTGTCAGTCCTAACTTTAGAGATGCTCGTGGAAGAACAGGACTCCACTGGGCATCATATTTTGGGAGAGAGGAAACTGTGATTGCTCTAATCAAATTAGGGACAGACCCGGGTGCTGTTGAGGATCCAACATCAGCATTTCCTCAAGGGCTAACAGCTGCCGATTTAGCTTCAAGTAGAGGACATAAAGGAATTGCAGGATATTTGGCTGAGGCTGATCTAACAAGTCGCTTATCTACAATGACTGTCAGTGAAAATGAGATGGATAGCATTGCCGCAACCAGAGCAGCTGATAGTGCTTTTGAGACTGCTCAAGCTGACTCATCTAATATGACAATGGATGAGCAACGTTATCTGAAAGAGTCACTTGCTGTTTATCGAAAATCAGCTCATGCAGCAGCATCAATTCAAGCTGCCTTTAGAGCAAAATCATTTCGTCATAGACAATTAATCAAAACTTCTGGTGATATATCTGAAGCAGCACTAGACCTAGTTGCAGTTGGTTCTTTGAATAAATTTCAGAAGATGGGTCACTTTGAGGATTATCTGCATTTTGCTGCTTTAAGGATCCAAAAGAGATACCGTGGGTGGAAAGGAAGAAAAGAATTTTTGAAGATACGGAACCGTATTGTAAAAATTCAGGCCCATGTTAGAGGACACCAAGTTCGTAAACAGTACAAAAAGGTTGTTTGGTCTGTTAGCATTGTGGAAAAGGCAATATTGCGTTGGAGGCGTAAAGGAGCTGGTCTTCGAGGATTCCGAATTGAGCAGCCAGCTGGCATTATGGCTCCAAATGCTGAGAGAAGTGATGAATACGAATTTCTGAGCATTGGGCGGAGACAGAAATCTGATGATGTTAATAAGGCTCTGGCTAGAGTTAAGTCCATGGTTCGTCACCCAGAGGCCCGTGATCAGTATATGAGGCTTGTCATGAAATTTCAGAATTTCAAGATTGGTGAGGGAAGCAGCTGA 2991 0.4223 MAESRKYILNQQLDLDEILREAEHRWLRPPEICEILRNFQKFELTADPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDNENFQRRSYWMLDEQLEHIVLVHYREVKEGYKCGISQLPIHPIPLVGSLKSSSAPSSAQANSPVSVAQTSYASSVNRVDWNGGTLSSEYEDVDSAIGHQTSSHTQPVSSSLPHSTPLLSHEVNGFSQLSRRPYNSWSSSLPSLYLGTCSSPWALNENSSRNIVNMHDRNLHVEGSIEGSKVDFIDHKLGDVRLDPGSTIQDAVTCRDRPFTYMYVQPITGVSKTVNQAQKEHDLNSVHTTHDHTDHPAVASSTVIVEQKLKNGNTYNGESEHFESGELKKLDSFGRWMDKEIGGDCDDSLMASDSGNYWNTLDAHNGDKEVSSLHMQLDMDSLGPSLSQEQLFSIHEFSPDWAYAGVKTKVLIVGTFLGSKKLYADKKWGCMFGEIEVSAEVLTDNVIRCQTPLHSPGRVPFYVTCSNRLACSEVREFEYRENPTIGPVGVKITPEDEVRFQVRLLKLVDLGPDKKWLNCSVSQCEKCKLKGTMYSMRDDSGIFEQTSKINESDYGNPRDVLLQRFLRDKLYEWLVFKVHEEGKGPHVLDNEGQGVIHLAAALGYAWVMGPLAAAGVSPNFRDARGRTGLHWASYFGREETVIALIKLGTDPGAVEDPTSAFPQGLTAADLASSRGHKGIAGYLAEADLTSRLSTMTVSENEMDSIAATRAADSAFETAQADSSNMTMDEQRYLKESLAVYRKSAHAAASIQAAFRAKSFRHRQLIKTSGDISEAALDLVAVGSLNKFQKMGHFEDYLHFAALRIQKRYRGWKGRKEFLKIRNRIVKIQAHVRGHQVRKQYKKVVWSVSIVEKAILRWRRKGAGLRGFRIEQPAGIMAPNAERSDEYEFLSIGRRQKSDDVNKALARVKSMVRHPEARDQYMRLVMKFQNFKIGEGSS 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1922 996 CDD IPT 452 540 - -
Glsi13g1922 996 ProSiteProfiles Ankyrin repeat region circular profile. 683 709 - -
Glsi13g1922 996 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Glsi13g1922 996 ProSiteProfiles IQ motif profile. 856 885 IPR000048 GO:0005515
Glsi13g1922 996 Gene3D - 625 832 IPR036770 -
Glsi13g1922 996 Gene3D - 854 903 - -
Glsi13g1922 996 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 849 906 IPR027417 -
Glsi13g1922 996 SMART CG_1_2 18 136 IPR005559 GO:0003677
Glsi13g1922 996 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Glsi13g1922 996 SUPERFAMILY E set domains 453 539 IPR014756 -
Glsi13g1922 996 ProSiteProfiles Ankyrin repeat profile. 683 715 IPR002110 GO:0005515
Glsi13g1922 996 FunFam Calmodulin-binding transcription activator 2 446 543 - -
Glsi13g1922 996 Pfam IQ calmodulin-binding motif 882 900 IPR000048 GO:0005515
Glsi13g1922 996 Pfam IQ calmodulin-binding motif 859 876 IPR000048 GO:0005515
Glsi13g1922 996 Gene3D Immunoglobulins 446 545 IPR013783 -
Glsi13g1922 996 ProSiteProfiles IQ motif profile. 879 907 IPR000048 GO:0005515
Glsi13g1922 996 SMART ANK_2a 722 751 IPR002110 GO:0005515
Glsi13g1922 996 SMART ANK_2a 683 712 IPR002110 GO:0005515
Glsi13g1922 996 SUPERFAMILY Ankyrin repeat 636 745 IPR036770 -
Glsi13g1922 996 SMART iq_5 878 900 IPR000048 GO:0005515
Glsi13g1922 996 SMART iq_5 801 823 IPR000048 GO:0005515
Glsi13g1922 996 SMART iq_5 855 877 IPR000048 GO:0005515
Glsi13g1922 996 FunFam Calmodulin-binding transcription activator 2 855 903 - -
Glsi13g1922 996 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 987 - -
Glsi13g1922 996 Pfam IPT/TIG domain 453 538 IPR002909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1922 Glsi-ChrGlsi13 34876623 34883617 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1922 59 983 CAMTA Transcription Factor Family AT2G22300 39.959 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Glsi13g1922 CG-1 4.6e-49 No_clan