Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1913 ATGATTGTGAGTCAGAATATGGTAGCCGAAGCGGAAATTATCTGCCAGCAGAGCATCCCAAGGTTGGATGTTAAGTATCATCTTTGCGTATCACAAGAGCACAACGTCAAGGTTCGGGTTTCCCCCACATCGCCTTCTGCCCCGATCTTTAGCGAAGTACGGGTTCCATCTGAATCGATTTCTACTGAAACATCTCGCTTTGATTCGGTTATGACTTGCTCTGAGATCATTAAAGATCCTATATTAGAGACCACTGCAACCAAGTTTATCCCGAATGTCCGTTCCGGTAGCTTTACTGAAATTGGGCCCCGGGGATCTATGGATGACGAACACATTCAAATAGATAATCTAGCAGCCCACCTTGGATTTGTGTTCAAGTACCCTATACCAAGTGCATTTTATGCAGTTTTTGATGGTCATGGAGGGCCTGAGGCAGCTGCTTTTATTAAGAGGAATGCTTTGAGACTATTTTTTGAAGATGCTAATCTGCTGCAATTTTATGATACCGATGCATTTTTTCTAAAGAAGTTGGAGGATTCTCATCGGAGAGCTTTTTTACTTGCAGACCTTGCCTTGGCTGATGAACAGAGTGTTAGTAGTTCCTGTGGGACAACAGCATTGACTGCCCTTATAATTGGAAGGCACTTGCTGGTTGCTAATGCTGGTGATTGTCGAGCTGTTCTTTGCAGGAGAGGACTAGCCGTTGAGATGTCTCAGGATCATAGACCTAGTTATTTACCGGAACGGAGGAGAGTGGAGGAGTCTGGTGGTTTCATTGATGATGGATATCTCAATGGTTATCTTTCGGTCACTCGAGCCCTTGGGGATTGGTACTTAAAATTTCCACTTGGTTCTTCATCACCTCTTATTGCCGATCCAGATGTTCAGCAAGTTACATTGACAGAGGATGATGAGTTCTTGATCATTGGGTGTGATGGGATTTGGGATGTGATGTCAAGCCAACATGCAGTTAGTCTTGTCCGACGTGGATTAAGAAGGCATGATGACCCGCAGCTATGTGCCAGAGAACTAGTCAATGAAGCATTGCGCCTTAACACATCTGATAATCTCACCGTGATTGTTATATGTTTGTCCTCCATAGGAGGCACTGTTGCATCATGTCCACCACTAAGGCGTAGATTCAAAGCTTGCAGTCTGTCTGAAGAAGCCCGAAACCGGTTGAAGAGCTTGCTAGAGGGAAACTGA 1206 0.4469 MIVSQNMVAEAEIICQQSIPRLDVKYHLCVSQEHNVKVRVSPTSPSAPIFSEVRVPSESISTETSRFDSVMTCSEIIKDPILETTATKFIPNVRSGSFTEIGPRGSMDDEHIQIDNLAAHLGFVFKYPIPSAFYAVFDGHGGPEAAAFIKRNALRLFFEDANLLQFYDTDAFFLKKLEDSHRRAFLLADLALADEQSVSSSCGTTALTALIIGRHLLVANAGDCRAVLCRRGLAVEMSQDHRPSYLPERRRVEESGGFIDDGYLNGYLSVTRALGDWYLKFPLGSSSPLIADPDVQQVTLTEDDEFLIIGCDGIWDVMSSQHAVSLVRRGLRRHDDPQLCARELVNEALRLNTSDNLTVIVICLSSIGGTVASCPPLRRRFKACSLSEEARNRLKSLLEGN 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1913 401 CDD PP2Cc 94 364 IPR001932 -
Glsi13g1913 401 Pfam Protein phosphatase 2C 104 356 IPR001932 -
Glsi13g1913 401 PANTHER PROTEIN PHOSPHATASE 2C 98 362 IPR015655 GO:0004722|GO:0006470
Glsi13g1913 401 SMART PP2C_4 84 362 IPR001932 -
Glsi13g1913 401 SMART PP2C_SIG_2 109 364 IPR001932 -
Glsi13g1913 401 Gene3D - 81 367 IPR036457 -
Glsi13g1913 401 SUPERFAMILY PP2C-like 85 365 IPR036457 -
Glsi13g1913 401 ProSitePatterns PPM-type phosphatase domain signature. 133 141 IPR000222 GO:0043169
Glsi13g1913 401 FunFam Probable protein phosphatase 2C 22 79 367 - -
Glsi13g1913 401 ProSiteProfiles PPM-type phosphatase domain profile. 94 364 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1913 Glsi-ChrGlsi13 34816141 34818048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1913 1 400 PP2C-type Phosphatase Gene Family AT1G48040 59.158 2.88e-155 441