Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1908 ATGGATGTAAAAGGAAGAGAAAGCATCTCCACCACCCTCCAAAGCGACGACGACAGCGATCTCCGAAGAGGCCCTTGGACTGCGGACGAGGACTTCACCCTCATGAATTACATTGCCACTCACGGCGAAGGTCGCTGGAATTCCCTAGCTCGCTCTGCCGGCCTCAAACGTACTGGTAAGAGCTGCAGATTGAGGTGGCTCAACTATCTCCGTCCCGATGTTCGACGTGGAAACATCACACTTGAAGAACAGCTTCTCATTCTTGAGCTCCATTCTCGCTGGGGAAACAGATGGTCCAAAATTGCCCAGTATTTGCCGGGAAGAACCGACAATGAGATCAAGAACTACTGGAGAACCCGAGTCCAAAAGCATGCCAAACAACTCAAATGTGACGTGAACAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCCAGGCTGGTGGAGCGCATTCAAGCCGCAGCTGCCACCTCCACGCCAGATTCTCGAACCTTATCTACCACCACCGAGAATACCACATACAACTATAACAACAACAACCTCAACAACAATATGGAGGTTGAGAATGGGAACACGTATTTAACTTCAGCACCAGCAGTTATGAGCAATAATGGCTATGGAGGTTCACAGAGTTACACGCCGGACCCGGAGAATAGCAGCACAGCTGCTTCATCGGACTCCTTTGGTACTCAGGTTTCGCCGATGTCGGAGTTGACTGATTATTACAGTGTCCCAAGTATTAGCAATAACGGTAACGCTAATCAAGATTACTACCAACCCTCTCAGATTAACTACTCCGACTGCATCACCAGTCCATCTGGGTTCTTCCCCCAAGGATTGGATTTCCATGTCACGGAGCCAAACAACCAGTGGATTTACAGTGGGGACACGTTGGACAATTTGTGGAATGTTGATAACATGTTCTTTTTACAGCAGCACCTCATTGACAACATGTAA 963 0.487 MDVKGRESISTTLQSDDDSDLRRGPWTADEDFTLMNYIATHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAAATSTPDSRTLSTTTENTTYNYNNNNLNNNMEVENGNTYLTSAPAVMSNNGYGGSQSYTPDPENSSTAASSDSFGTQVSPMSELTDYYSVPSISNNGNANQDYYQPSQINYSDCITSPSGFFPQGLDFHVTEPNNQWIYSGDTLDNLWNVDNMFFLQQHLIDNM 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1908 320 MobiDBLite consensus disorder prediction 157 190 - -
Glsi13g1908 320 FunFam Myb transcription factor 23 75 - -
Glsi13g1908 320 MobiDBLite consensus disorder prediction 207 234 - -
Glsi13g1908 320 Gene3D - 80 143 - -
Glsi13g1908 320 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Glsi13g1908 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 70 IPR017930 -
Glsi13g1908 320 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
Glsi13g1908 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Glsi13g1908 320 MobiDBLite consensus disorder prediction 1 24 - -
Glsi13g1908 320 Gene3D - 20 76 - -
Glsi13g1908 320 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Glsi13g1908 320 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Glsi13g1908 320 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Glsi13g1908 320 CDD SANT 96 119 IPR001005 -
Glsi13g1908 320 SMART sant 75 123 IPR001005 -
Glsi13g1908 320 SMART sant 22 72 IPR001005 -
Glsi13g1908 320 FunFam MYB transcription factor 80 143 - -
Glsi13g1908 320 MobiDBLite consensus disorder prediction 156 190 - -
Glsi13g1908 320 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 201 IPR044676 GO:0003700|GO:0006355|GO:0043565
Glsi13g1908 320 CDD SANT 25 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1908 Glsi-ChrGlsi13 34747904 34749489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1908 1 297 MYB Transcription Factor Family AT3G06490 58.667 1.32e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi13g1908 Myb_DNA-binding 2.3e-14 CL0123