Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1898 ATGGCTGAATATACGGCAGATTTGCAAAGCTTTAGACAGTCATTTAATTTCTTAGATATTGATCCAAGCATAGAACTAATAAATCAATTCACAGAGATGAATTCACATGTCCTTGACAGCGCAAATCTGAATTTGCAGAGCATGATTCCCTTCTCCTGTGATAGCTTCCTGGGCTCTCTAGAACCTGAATTTCCAGGAAACTTGGGAGAAAACTTTCCGGGCCTTGTCCATCATGTCAACCACAAGGCAGTGCCAGTTTCCCTGACCAGTTTTCCTGCAGAAAATGAAATCCATGAAAGTAAGAAGAGGAAAGCAATGGATATGCCGGAGACCAGTTCTGCAAACTCAACTCCTGCAGTTTCTGAGAGTGGAAGCAAGATGAAAAATAGTTCTGGAAGAGGTAAGAGAGTAAAAAGTAATGAAACAGATGAGGAGAAACCGAAGGAAGTGGTTCATGTCAGAGCCAAAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGAAAAATCAATGAAAAATTAAGGTGCTTACGGAACATTGTCCCAGGATGTTACAAGACTATGGGTATGGCAGTAATGTTGGACGAGATCATAAACTATGTCCAGTCCTTGCAGCATCAAGTAGAGTTCCTTTCTATGAAGCTTACCGCAGCAAGTAACTTTTACGATTTCAATTCAGAGACAGATGCTTTGGAAACAATGCAGAGAGCAATGGCATCGGAGGCAAAAGAGCTAGCCAAGTATGCGAAAGAAGGACATGGAAGGGTTTCTTGCTTTCAACCAACTTGGACCCTATGA 813 0.4182 MAEYTADLQSFRQSFNFLDIDPSIELINQFTEMNSHVLDSANLNLQSMIPFSCDSFLGSLEPEFPGNLGENFPGLVHHVNHKAVPVSLTSFPAENEIHESKKRKAMDMPETSSANSTPAVSESGSKMKNSSGRGKRVKSNETDEEKPKEVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLRNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSMKLTAASNFYDFNSETDALETMQRAMASEAKELAKYAKEGHGRVSCFQPTWTL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1898 270 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 99 240 IPR024097 GO:0006355
Glsi13g1898 270 MobiDBLite consensus disorder prediction 109 130 - -
Glsi13g1898 270 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983
Glsi13g1898 270 MobiDBLite consensus disorder prediction 134 165 - -
Glsi13g1898 270 Gene3D - 156 228 IPR036638 GO:0046983
Glsi13g1898 270 FunFam transcription factor BEE 3-like 156 227 - -
Glsi13g1898 270 Coils Coil 236 256 - -
Glsi13g1898 270 MobiDBLite consensus disorder prediction 99 165 - -
Glsi13g1898 270 SMART finulus 165 215 IPR011598 GO:0046983
Glsi13g1898 270 CDD bHLH_AtBPE_like 149 234 - -
Glsi13g1898 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 209 IPR011598 GO:0046983
Glsi13g1898 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 225 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1898 Glsi-ChrGlsi13 34673484 34675057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1898 1 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 47.552 3.97e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi13g1898 HLH 6.7e-05 No_clan