Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1897 ATGTCTACTTCTTCAAAGAGCATCTGCAGTTGTAGCGAAGATGATAATGAACTTAGAAGAGGACCTTGGACTCTTGAAGAGGATACTGTGCTCACCCAATACATAGCCAGCCATGGGGAGGGAAGATGGAATTTGCTGGCCAAGCGTTCAGGGTTAAGGAGAACAGGAAAGAGTTGCAGATTAAGATGGCTAAATTATCTAAAGCCAGATGTGAAGCGAGGAAATTTAAGCTCACAAGAGCAGTTTCTGATTCTTGAACTCCATTCAAAGTGGGGCAACAGATGGGCAAGGATTGCCCAACATTTGCCGGGAAGGACAGACAATGAGATCAAGAACTATTGGAGAACTCGGCTTCAGAAACAAGCCAGATATTTGAAAGCAAAAGAAGCGTCTTCTTCACTCCAAGGCCAAGCATTTGCTTTGCCTCTCGTCAGTGTTTCTCAGGATTCAACGATTGAAACAACAGAAACACAAATTCTTAGGGAGGAAGCTGGTATGAATGAAGCATTTCTCAATTATTCGTATGAATATGAGCAGAACTCGTACTCAGAACACAACAATAGTTCATACATGTCCTCTTCAGGATCAGCAAATATCCCAAAAGTACCTCAGCATCTGGGCTACAGTAACAGTGGTTGTCAATTTCATGCCTTGGACAACAATGATTTCGGCACTTTTGCACACGATGAATACTTTGTAACCAACAACGGCTGTGAGATGGAAACCGTCAACCTGGCAGAAAGCAGTTGGGTGAACGAAGAATTTGCTTGTAACATGTGGAACATGGATGAACTATGGCAGTTTAGGAACTTACAAAAGTAG 822 0.427 MSTSSKSICSCSEDDNELRRGPWTLEEDTVLTQYIASHGEGRWNLLAKRSGLRRTGKSCRLRWLNYLKPDVKRGNLSSQEQFLILELHSKWGNRWARIAQHLPGRTDNEIKNYWRTRLQKQARYLKAKEASSSLQGQAFALPLVSVSQDSTIETTETQILREEAGMNEAFLNYSYEYEQNSYSEHNNSSYMSSSGSANIPKVPQHLGYSNSGCQFHALDNNDFGTFAHDEYFVTNNGCEMETVNLAESSWVNEEFACNMWNMDELWQFRNLQK 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1897 273 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Glsi13g1897 273 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 15 189 IPR044676 GO:0003700|GO:0006355|GO:0043565
Glsi13g1897 273 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Glsi13g1897 273 Gene3D - 20 72 - -
Glsi13g1897 273 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Glsi13g1897 273 Pfam Myb-like DNA-binding domain 73 117 IPR001005 -
Glsi13g1897 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 122 IPR017930 -
Glsi13g1897 273 CDD SANT 77 118 IPR001005 -
Glsi13g1897 273 Gene3D - 77 121 - -
Glsi13g1897 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 71 IPR017930 -
Glsi13g1897 273 CDD SANT 22 67 IPR001005 -
Glsi13g1897 273 FunFam Myb transcription factor 20 72 - -
Glsi13g1897 273 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Glsi13g1897 273 SMART sant 19 69 IPR001005 -
Glsi13g1897 273 SMART sant 72 120 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1897 Glsi-ChrGlsi13 34665106 34666203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1897 15 269 MYB Transcription Factor Family AT1G68320 45.956 2.72e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi13g1897 Myb_DNA-binding 1.1e-14 CL0123