Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1895 ATGAGGTTTCTGTCTACCTTATGCCCCTGCTTCCACAGGAGGCTCGAAACCACCGCACCCTCTGCCTCTGCCTCCCATGAACCCACCGATGCTGCCGACTCTTGTGGCCTTTTCTTCGACCTCCACACTTTGCAACTCGCCACCAACTTCTTCTCCGAGTTGAATCAGTTGGGTCATGGAGGCTTTGGTCCTGTCTATAAGGGGTTGATGCCAAATGGCCAAGAAGTAGCCGTTAAGAAGCTGTCCCTAGACTCAAGACAAGGAGTTAGAGAATTTACCAATGAGGTCAAATTATTACTTAAAATCCAGCACAAGAACCTGGTTACATTATTTGGGTGTTGTGTTGAAGGACCTGAAAAGATACTTGTTTACGAGTATCTTCCAAACAGAAGCCTTGATCACTTTATCTTTGATAAAATGAAGTCATCATCTCTGGACTGGACAACACGATTTAGAATAGTTACAGGTGTGGCAAGAGGACTTCTCTACCTGCATGAAGAGGCCCCAACAAGAATTATTCATAGAGATATCAAAGCTAGTAACATACTGTTGGACGAGAAATTAAACGCAAAAATTTCGGACTTTGGCTTGGCAAGGCTATTTCCTGGGGAGGACACTCATGTGCAGACGTTTAGGATTTCAGGAACACATGGTTATATGGCTCCTGAATATGCATTGCGTGGATATTTATCTGTGAAGACTGATGTTTTCAGTTATGGAGTCTTGGTATTAGAAATTATGAGCGGGAGAAAAAATCATGACCGGCAACTTGGTGAAGAAAAGGCAGATCTTTTGAGCTATGCATGGCTGCTATATCAGAGAGGGAAGATTATGGACTTAATAGACCCAACCCTTGCCAAATACAATGGCGACGAGGCAGCAATGTGCATCCAGCTGGGTTTGTTGTGCTGTCAAGCAAGTGTAGCAGATAGACCTGATATAAATTCTGTTCATCTCATGCTCTCAAGTGACTCGTTCACTTTGCCCAAACCAGGTAAACCAGGAATTCAAGGCCGTGTAGGACGTTGGACTACAATCACAACTTCTGCTTTCACCAATACTAACGCTAGTAGTGCAACCAGGCCTTCTGTTGGTACTAGTTTTGTAGAGGAATATTCTAGAAATTCTATCTCTGTTTCTTCTTTTGATGAAGGAAGATGA 1161 0.435 MRFLSTLCPCFHRRLETTAPSASASHEPTDAADSCGLFFDLHTLQLATNFFSELNQLGHGGFGPVYKGLMPNGQEVAVKKLSLDSRQGVREFTNEVKLLLKIQHKNLVTLFGCCVEGPEKILVYEYLPNRSLDHFIFDKMKSSSLDWTTRFRIVTGVARGLLYLHEEAPTRIIHRDIKASNILLDEKLNAKISDFGLARLFPGEDTHVQTFRISGTHGYMAPEYALRGYLSVKTDVFSYGVLVLEIMSGRKNHDRQLGEEKADLLSYAWLLYQRGKIMDLIDPTLAKYNGDEAAMCIQLGLLCCQASVADRPDINSVHLMLSSDSFTLPKPGKPGIQGRVGRWTTITTSAFTNTNASSATRPSVGTSFVEEYSRNSISVSSFDEGR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1895 386 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 13 126 - -
Glsi13g1895 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Glsi13g1895 386 Gene3D Transferase(Phosphotransferase) domain 1 127 327 - -
Glsi13g1895 386 SMART serkin_6 51 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1895 386 Pfam Protein tyrosine and serine/threonine kinase 54 255 IPR001245 GO:0004672|GO:0006468
Glsi13g1895 386 CDD STKc_IRAK 57 321 - -
Glsi13g1895 386 ProSiteProfiles Protein kinase domain profile. 51 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1895 386 Gene3D Phosphorylase Kinase; domain 1 16 126 - -
Glsi13g1895 386 FunFam Cysteine-rich receptor-like protein kinase 41 127 327 - -
Glsi13g1895 386 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 35 355 - -
Glsi13g1895 386 SUPERFAMILY Protein kinase-like (PK-like) 36 321 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1895 Glsi-ChrGlsi13 34656307 34659327 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1895 3 340 Receptor kinase-like Gene Family AT4G23140 50.000 3.70e-112 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi13g1895 PK_Tyr_Ser-Thr 1.6e-45 CL0016