Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1893 ATGGCGACGCCGTTAACGGGATTGCAGCACTTGGACGGAGGTGGGGGAGTGGCGGTGCTTTCGAATTCTGTGAGCAAGCTCGATTCTTCTTCGCCCTCGTCCTCAGCATCCAATGGCAGCTTGAAGTGCTCTAAATTGGAGTCGCCGATTTTTATTTTCTTGTTCTTCCAAAAAGCGATTCGGAATGAGCTCGATGCTCTTCACCGATTGGCTATGGCATTTGCCACGGGCAATCGCTCTGATATTCAGCCGCTCTTTGAACGCTACCATTTCCTCAGATCCATCTATAGGCACCACTCCAATGCTGAAGATGAGGTGATTTTTCCCGCTCTTGATATACGTGTGAAGAATGTGGCACAGACATATTCTCTTGAACACAAGGGTGAAAGCAATCTCTTTGATCATCTATTTGAGCTGTTAAATTCTACCACCCAAAATGATGAAAGTTTCCCAAGGGAGTTAGCGTCCTGCACAGGAGCTCTACAAACGTCAGTTAGTCAACACATGGCTAAGGAAGAGGAGCAGGTATTTCCACTGCTTATTGAGAAATTCTCACTTGAGGAACAGGCATCTCTGGTTTGGCAGTTTTTGTGCAGTATTCCTGTCAATACAATGGCTGAATTTCTTCCTTGGCTATCAACATCTATATCACATGATGAATCTCAGGATCTGCAGAAGTGCTTAAGCAAGATAGTGCCAGAGGAAAAGCTTCTTCAAAAGGTTATTTTCACCTGGATGGAAGGTAGAAATGGTGCTAACACAGTTGAAAGTTGTGTAGATCATTCTCAGCTTCGATGTAGTCCTAGCCCAGTAATCCATCTGCTTGAGAAAGTGAACTGTGCATGTGAGTCCACAACAACTGGGAAAAGGAAATATTCTGATTCTAGTCTAGATGTTTCTGATACCACAGGAACACATCCAATAGATGAGATATTGCTCTGGCATAATGCGATAAAAAAAGAGTTAAGTGAGATAGCAGTGGAGACCAGAAAGATACGACTTTCTGGAGATTTTACTAATTTATCAGCTTTTAATGAAAGGTTGCAATTCATTGCGGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATATTTCCAGCGGTAGATGGGGAATTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCAGGTGTTTGATTGAAGGTATTCAAAGTGAAGGCGCAACATCTAATTCAGAAGCTGAATTTTATTCCAACTTATGCTCACATGCTGATCATATAATGGAAACCATACAGAGGCATTTTCGTAGTGAAGAAGCACAGGTTCTTCCACTTGCTCGGAAGCATTTTAGCTTCAAAAGGCAATGTGAGCTTTTGTATCAAAGTTTGTGCATGATGCCTCTGAAATTGATTGAGCGTGTCCTACCATGGTTGGTCGGATCATTATCAGAAGATGAAGCAAAGATGTTTTTGAAAAACATGCAATTGGCAGCTCCTGAAACAGATTCTGCTCTAGTCACACTCTTCTGTGGTTGGGCTTGCAAGGCTCGTAAGGAGGGTCTGTGCTTGTCTTCAAGTGCATCGGGTTGCTGTCCTGTTCAAAGATTTGCTGATATTGAAGAAAATTTATTTCAGTCATCCTGTGTTTGTGCTTCTGCATTATCTTCTAGTGATTGCGTAGTATCAGTTGAATCAAATGGGAACAAAAGACCAGTCAAGCGAAACATATTGGATTTCGGAAAGAATGGAGATGTCCGTGAAGCTTCAGAGACTGAAAGTCTCCAAAAACAATGTTGTAGTGCTCGGTCTTGTTGTGTGCCTGGCTTAGGAGTAAATAGTAATAATCTGGGGTTGAGTTCTCTTTCTACTACCAAGTCCTTGCGGTCCTTGTCTTTCAGTTCTTCCCCCCCTTCTCTTAATTCCAGTCTTTTCATATGGGAAACAGATAACAGCTCATGTGATTCTGGCTCTGCAGAAAGACCAATTGATACTATATTTAAATTCCATATAGCTATACGCAAAGACTTGGAGTATTTAGATGCTGAATCTGGAAAGCTTAGTGATGGTGATGAGACAATTCTTCGTCAATTTACTGGAAGATTTCGTCTTTTATGGGGTTTATATAGAGCTCACAGTAATGCTGAAGATGATATAGTATTTCCAGCATTGGAATCCAAAGAGGCTCTTCATAATGTGAGTCATTCATACATGCTAGACCATAAGCAGGAAGAAAAATTGTTTGAAGATATTTCCAATGTTCTTTCTGAGCTTTCTGTCCTTCATGAAGGCTTGCAGATAACTAATATGTCAGAGGATACAAGTAAAAGTAATTTCGAAACTTCTGATGCCAGTGTTAGTGATAATATCAGAATGTATAATGAGCTTGCAACTAAGCTTCAAGGAATGTGCAAATCCATAAGAGTGACCCTGGATCAGCATATTTTCAGAGAAGAGCGTGAGCTCTGGCCGTTGTTTGGGAGACATTTCACTGTGGAAGAACAAGACAAGATTGTGGGCCGGATAATTGGAACTACCGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACTTCTGCACTGACTCAGGATGAACAGAACAAAATGATGGACACATGGAAGCAGGCAACTAAGAACACTATGTTTAATGAATGGCTTAACGAATGCTGGAAAGAGAGTCCATCTTCTATCTCACTAACTGAAACATCAGAGCATAGCACTTCTCAAAGAGGTACTGAATATCAAGAAAGCTTGGACCTAAATGATCAGATTTTTAAGCCGGGTTGGAAAGACATATTCCGAATGAATCAGAATGAGCTTGAGTCAGAGATACGGAAGGTTTATCAGGACTCAACTCTTGATCCAAGGAGAAAAGCATATCTTGTGCAGAATCTAATGACTAGTCGCTGGATAGCTGCCCAGCAGAAGTTACCTAAACCTGTAGCTGGGGAGTCTTCTAATGGTGAGGAAATAGAAGGACGCTCACCATCATTTTGGGACCCAGAAAAAAAAGAATTTGGGTGTGAGCATTATAAGAGGAACTGCAAACTTCGAGCTGCATGTTGTGGCAAGTTGTTTACATGCAGATTTTGCCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGTAACGTTGGAGATGATGTGTATGCACTGCCTGAAGATACAAGCTGTTGGGCCTATATGCATGACCCCTTCGTGTAATGGACTTTCAATGGCAAAGTACTATTGCAACATATGCAAATTTTTTGATGATGAAAGGAATGTATATCATTGCCCATTTTGCAATTTATGCCGGGTGGGGAGAGGGCTTGGAATTGATTATTTTCATTGTATGAAATGCAATTGTTGCCTGGGGATAAAGTCGGCATCTCACAAGTGCCTAGAGAAAGGTTTGGAAATGAACTGTCCGATTTGCTGTGACTTCTTATTCACATCAAGTGCTACAGTCAGAGCTCTGCCTTGTGGTCATTATATGCATTCAGCTTGCTTTCAGGCATACACTTGTAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGCATGCTTGATGCTTTATTGGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGACCGTTATCAGGATATACTGTGCCATGACTGTGATCGAAAGGGCACTTCACGCTTCCACTGGTTATATCACAAATGTGGATTTTGTGGCTCATACAATACCCGGGTGATCAAGTGTGAGGCAACTAATTCCCTCTGCTCTTGA 3744 0.4167 MATPLTGLQHLDGGGGVAVLSNSVSKLDSSSPSSSASNGSLKCSKLESPIFIFLFFQKAIRNELDALHRLAMAFATGNRSDIQPLFERYHFLRSIYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSTTQNDESFPRELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNTMAEFLPWLSTSISHDESQDLQKCLSKIVPEEKLLQKVIFTWMEGRNGANTVESCVDHSQLRCSPSPVIHLLEKVNCACESTTTGKRKYSDSSLDVSDTTGTHPIDEILLWHNAIKKELSEIAVETRKIRLSGDFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRCLIEGIQSEGATSNSEAEFYSNLCSHADHIMETIQRHFRSEEAQVLPLARKHFSFKRQCELLYQSLCMMPLKLIERVLPWLVGSLSEDEAKMFLKNMQLAAPETDSALVTLFCGWACKARKEGLCLSSSASGCCPVQRFADIEENLFQSSCVCASALSSSDCVVSVESNGNKRPVKRNILDFGKNGDVREASETESLQKQCCSARSCCVPGLGVNSNNLGLSSLSTTKSLRSLSFSSSPPSLNSSLFIWETDNSSCDSGSAERPIDTIFKFHIAIRKDLEYLDAESGKLSDGDETILRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEKLFEDISNVLSELSVLHEGLQITNMSEDTSKSNFETSDASVSDNIRMYNELATKLQGMCKSIRVTLDQHIFREERELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKESPSSISLTETSEHSTSQRGTEYQESLDLNDQIFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKPVAGESSNGEEIEGRSPSFWDPEKKEFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKVTLEMMCMHCLKIQAVGPICMTPSCNGLSMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDFLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCHDCDRKGTSRFHWLYHKCGFCGSYNTRVIKCEATNSLCS 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1893 1247 Pfam Zinc-ribbon 1178 1235 IPR039512 -
Glsi13g1893 1247 Pfam Hemerythrin HHE cation binding domain 58 180 IPR012312 -
Glsi13g1893 1247 Pfam Hemerythrin HHE cation binding domain 655 818 IPR012312 -
Glsi13g1893 1247 Pfam Hemerythrin HHE cation binding domain 306 440 IPR012312 -
Glsi13g1893 1247 SUPERFAMILY CHY zinc finger-like 996 1058 IPR037274 GO:0008270
Glsi13g1893 1247 CDD Hr-like 309 438 - -
Glsi13g1893 1247 ProSiteProfiles Zinc finger CHY-type profile. 995 1064 IPR008913 GO:0008270
Glsi13g1893 1247 CDD Hr-like 657 817 - -
Glsi13g1893 1247 SMART ring_2 1131 1172 IPR001841 -
Glsi13g1893 1247 Gene3D nmb1532 protein domain like 650 891 - -
Glsi13g1893 1247 Pfam CHY zinc finger 1002 1077 IPR008913 GO:0008270
Glsi13g1893 1247 FunFam Zinc finger protein-related isoform 1 1126 1175 - -
Glsi13g1893 1247 SUPERFAMILY RING/U-box 1128 1183 - -
Glsi13g1893 1247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1127 1175 IPR013083 -
Glsi13g1893 1247 ProSiteProfiles Zinc finger RING-type profile. 1131 1173 IPR001841 -
Glsi13g1893 1247 Gene3D - 1202 1243 - -
Glsi13g1893 1247 SUPERFAMILY Zinc hairpin stack 1068 1124 IPR037275 -
Glsi13g1893 1247 Pfam Ring finger domain 1130 1172 IPR001841 -
Glsi13g1893 1247 CDD RING-H2_Pirh2-like 1130 1173 - -
Glsi13g1893 1247 CDD Hr-like 52 178 - -
Glsi13g1893 1247 ProSiteProfiles Zinc finger CTCHY-type profile. 1067 1130 IPR017921 -
Glsi13g1893 1247 Gene3D nmb1532 protein domain like 309 456 - -
Glsi13g1893 1247 Gene3D nmb1532 protein domain like 48 198 - -
Glsi13g1893 1247 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 698 1242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1893 Glsi-ChrGlsi13 34638920 34648491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1893 1 1247 C2H2 Transcription Factor Family AT3G18290 68.467 0.0 1723