Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1889 ATGAGCCAATCTATGTCCCGTTCCTTGAACATTCTATTGTCCTCCTCCATGTTTTCAAATTCCAATCATATACATACCAACTACTATGAAATTTCCCTAAATATGCTTCCCTCCAATGCCTCTTCTCCTCTCTTCTTTTCTGCTTCCCTTTCAAATCTCATGTACATAATGATCCATCAAATCTTCTCCCATTACTATAAACCTCCTCAAATATGCATTATTATCATTGTCTCCATCTTCTTTTCTGTCCCTGTTCTATCTGCTAATCCAAAATTTGAGGCCTGTGCACCTCAAAGCTGTGGAAATGGCCCCATCATAAAGTACCCCTTCTGGATTTCTTATGAACAAGAAACATTTTGTGGCTATCCTCACTTTGAGATCAGCTGTAGTCACAAATATCCAATTCTTAGAATTTCAAATAATGATTTTATAGTTAGAGATATCTCATACTCTAACTCTTCGTTTCTTGTTACTAACATTGCGGTGTATGAGGATAAATGCCCCGTTCCCATGTATAATTACAGCCTTGATCAAACTCCATTCACGTATAGTTCTGATAGTGCCAATATATCTTTCTTCTACAACTGTACCACAGAACCCATAGATTACCCCACTTATGAAGTTGACTGTGCTGAAAATGGTACACATTATTCTTTTGCGGTTTTTCATAAGGAGGCACTGGAGCACAAAAACTACTCGTTCAATGAGTGCCAGTTCATGGTTAATGTTCCAGTGAATGTGAATGGTGCAGTTAATTTCACTAGCTTATTGCGAATGAATTACACTGAAATTTTGAAGATGGGGTTTCTTTTGAATTGGGTTGCATCTGATTGCCAGCTCTGCGAGGAAAGTGGTGGACGCTGTGGATTTGATGAATATAAGTTCCTCTGCCTCTGCAAAGATAAGCCTCGTCTCAAAAGTTGTGAAGATGGTGGCGCTGCATCATCATTCAGCGTGATTGTTATGAGCATTGCCTTCTATTTATATCTGCGTCGAAACAAAAATCGTTATGCAAAATCAAGTATACAATCTCAGTTACAGACCATGTCTTCCGATTCCTCTTTAAAGGACCTTGAGAGGGGAAGTAAATACTTTGGCGTCCACCTCTTCACCTACAGTGAACTTGAAGAGGCCACTAACTATTTTGATTCAACCAGAGAACTTGGAGATGGGGGTTTTGGGACAGTTTATTGTGGCAAACTTCGAGATGGGCGTACTGTTGCAGTGAAACGGTTGTATGAGAACAATTGCAGGAGGATGGAGCAATTCATGAATGAAGTGGAGATCTTAACTCGTTTGCACCACCAAAATCTAGTTTCACTTTATGGCTGCACTTCTCGCCACAGCCGTGAACTTCTGCTTGTATACGAGTACATTCCTAATGGAACTGTGGCTGATCATCTTCATGGTGAACGAGCAAAACCTGGCTCACTCCCCTGGCATGTCAGAATAAATATTGCCATAGAGACTGCAAGTGCATTGGCGTATCTTCATGCATCTGACATCATCCATCGTGATGTCAAAACCACCAATATCCTTCTGGACAATCACTTCTGTGTCAAAGTAGCAGATTTTGGACTTTCCCGTCTTTTCCCAAACGATGTCACTCACATTTCAACAGCTCCACAAGGAACTCCTGGGTATGTGGATCCAGAGTACCATCAGTGCTACCAGCTCACTGACAAAAGTGATGTCTATAGCTTTGGAGTGGTACTCATTGAGCTAATATCGTCCATGCCAGCTGTTGACATCACAAGGCATCGCCATGAAATCAATTTGTCTAACATGGCCATCAACAAGATTCAAAACGGGGCACTGCCTGAGCTTGTGGACCCAATTCTTGGGTTTGAAGCAGATTGCAAGGTAAGGAAAATGATAAATGGTGTAGCAGAGTTGGCATTTCAGTGCTTGCAGAGTGTGAAAGATATGAGACCATCCATGGAACATGTGCTTCAACGACTGATGGATATACAGAATGATGGGAAAGATAAGACCAAAGCAGAGGAGATGGATATCTCAGCAGATGATGTTGTGTTGCTAAAGAATGAACCACCTCCACCATCACCTGATTCAAATTTGAGGAGCACATCTACCACTCCAAATGCTAGCGGATAA 2115 0.4142 MSQSMSRSLNILLSSSMFSNSNHIHTNYYEISLNMLPSNASSPLFFSASLSNLMYIMIHQIFSHYYKPPQICIIIIVSIFFSVPVLSANPKFEACAPQSCGNGPIIKYPFWISYEQETFCGYPHFEISCSHKYPILRISNNDFIVRDISYSNSSFLVTNIAVYEDKCPVPMYNYSLDQTPFTYSSDSANISFFYNCTTEPIDYPTYEVDCAENGTHYSFAVFHKEALEHKNYSFNECQFMVNVPVNVNGAVNFTSLLRMNYTEILKMGFLLNWVASDCQLCEESGGRCGFDEYKFLCLCKDKPRLKSCEDGGAASSFSVIVMSIAFYLYLRRNKNRYAKSSIQSQLQTMSSDSSLKDLERGSKYFGVHLFTYSELEEATNYFDSTRELGDGGFGTVYCGKLRDGRTVAVKRLYENNCRRMEQFMNEVEILTRLHHQNLVSLYGCTSRHSRELLLVYEYIPNGTVADHLHGERAKPGSLPWHVRINIAIETASALAYLHASDIIHRDVKTTNILLDNHFCVKVADFGLSRLFPNDVTHISTAPQGTPGYVDPEYHQCYQLTDKSDVYSFGVVLIELISSMPAVDITRHRHEINLSNMAINKIQNGALPELVDPILGFEADCKVRKMINGVAELAFQCLQSVKDMRPSMEHVLQRLMDIQNDGKDKTKAEEMDISADDVVLLKNEPPPPSPDSNLRSTSTTPNASG 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1889 704 MobiDBLite consensus disorder prediction 679 704 - -
Glsi13g1889 704 FunFam Wall-associated receptor kinase-like 20 459 667 - -
Glsi13g1889 704 ProSitePatterns Protein kinases ATP-binding region signature. 388 410 IPR017441 GO:0005524
Glsi13g1889 704 ProSiteProfiles Protein kinase domain profile. 382 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1889 704 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 73 701 IPR044652 GO:0004672
Glsi13g1889 704 Pfam Protein kinase domain 384 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1889 704 Pfam Wall-associated receptor kinase galacturonan-binding 95 157 IPR025287 GO:0030247
Glsi13g1889 704 Gene3D Phosphorylase Kinase; domain 1 355 458 - -
Glsi13g1889 704 Gene3D Transferase(Phosphotransferase) domain 1 459 672 - -
Glsi13g1889 704 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 354 458 - -
Glsi13g1889 704 Pfam Wall-associated receptor kinase C-terminal 215 302 IPR032872 -
Glsi13g1889 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672|GO:0006468
Glsi13g1889 704 SUPERFAMILY Protein kinase-like (PK-like) 360 655 IPR011009 -
Glsi13g1889 704 SMART serkin_6 382 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1889 Glsi-ChrGlsi13 34608535 34611313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1889 274 704 Receptor kinase-like Gene Family AT1G25390 56.763 2.42e-158 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Glsi13g1889 Pkinase 4.5e-48 CL0016