Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1887 ATGTTTGAGTGGGTGTGTGAGATTAGAGGCTTAGAGGTGGTGTTAATGAAGCTGATACGAGAAGATAGTGACGGAGAGGGTTCCCGTGACACTCTATTGGACGGAGAAAATATGATACAATTAATATTCTCGCATATGGTCATGGACGGAAGAAAATCACTTGGTTCCCAAGGTGCTTTAACTTTCGGAACAATGGCCATCTTCTCGTTTGTATCTCAATGTTTCAGTCCCAGTGTAAGTAAAAGCGATCCTTCGGTACTTAGGAGTGCTGAGGTGAAGGGCAGTCAACTAGTGCCTGTGGATTTTGAGGTGGCAAGCAGCCCCGTCCAATCAGGGCCTGTGATTTCTGAGGTACCGATTAGCCATGTTCAGTCTGTGGTGCTTGATTCTGAGGTACTGTGCAGCCACGGCAGCAAAAGTGAAATCTTCAAGTATTCTGAACTCAAAGATGCCACCAACAATTTTGACCCTGATAAAATACTTGGGAGAGGAGGCTATGGGACGACAGTATACCACGGAATTCTTAAAGATGGGCATCCTGTTGCAATAAAGCAGTTGCATGAAGACAGGTTCAAGACCTTGAGGTTACATGATGAGAAGCTCCAGAGAGAGAAACTTGGAAAGTTGATGACTGAAGTTTCAATGTTAACTTGCGTGAGCCATGAAAACCTTGTCCATCTGTATGGCTGCACCTCTCCTCGTACCTGTGAACTACTTCTAGTGCAAGAATACATTCCCAACGGAACTCTTTCTAATCATCTTCTTGGTTCACTACTGAAACCTGGCGCACTCCCCTGGTACACTCGATTAAATATTGCTGTACAAACTGCAAGTGCATTGGCTTTTCTCCATGCTTTGGAAATACTACACCGTGATGTGAAGACCAGTAATATTCTGCTTGACAACAGTTTCAATGCTAAAGTTACGGACTTTGGATTGTTACACCTTTTCCCACTTGGTGTTACCCATATTACTACTGATCCTACTGGGACCCCTGGTTATATTGATCCAGAATATTATGAGCACTGCCATCTTTCTGATAAAAGTGATGTATATAGCTTTGGAGTAGTGCTGATTGAGCTGATATCGTCCCTGCCAGCATTTGCCGAGGATGACAAAAATCCCTGTCTTTCTGACTTTGCCATCGATAAAATCCGTGGTGGACAACTCCGAAGCCTTGTTGATCCAGCTCTTGGATTTGAATCAGACAACTGGATAAGTCAAACAATTAGTGCGGTGGCAGAGTTGGCCTCTAGCTGTCTGCAACGCCACAGAGACATGAGACCTTCCATGTCTGAGGTGTTGGATAGGCTCAAGAGCATTAGAGGTAAAAGAACTGAAAATGCTCTTTCCTGGGATCCAGAAAGTTAG 1371 0.4427 MFEWVCEIRGLEVVLMKLIREDSDGEGSRDTLLDGENMIQLIFSHMVMDGRKSLGSQGALTFGTMAIFSFVSQCFSPSVSKSDPSVLRSAEVKGSQLVPVDFEVASSPVQSGPVISEVPISHVQSVVLDSEVLCSHGSKSEIFKYSELKDATNNFDPDKILGRGGYGTTVYHGILKDGHPVAIKQLHEDRFKTLRLHDEKLQREKLGKLMTEVSMLTCVSHENLVHLYGCTSPRTCELLLVQEYIPNGTLSNHLLGSLLKPGALPWYTRLNIAVQTASALAFLHALEILHRDVKTSNILLDNSFNAKVTDFGLLHLFPLGVTHITTDPTGTPGYIDPEYYEHCHLSDKSDVYSFGVVLIELISSLPAFAEDDKNPCLSDFAIDKIRGGQLRSLVDPALGFESDNWISQTISAVAELASSCLQRHRDMRPSMSEVLDRLKSIRGKRTENALSWDPES 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1887 456 ProSiteProfiles Protein kinase domain profile. 155 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1887 456 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 101 445 IPR044652 GO:0004672
Glsi13g1887 456 SMART serkin_6 155 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1887 456 Pfam Protein kinase domain 158 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1887 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Glsi13g1887 456 Gene3D Transferase(Phosphotransferase) domain 1 245 453 - -
Glsi13g1887 456 Gene3D Phosphorylase Kinase; domain 1 128 244 - -
Glsi13g1887 456 SUPERFAMILY Protein kinase-like (PK-like) 136 438 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1887 Glsi-ChrGlsi13 34600777 34605485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1887 139 444 Receptor kinase-like Gene Family AT1G25390 50.321 5.31e-95 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Glsi13g1887 Pkinase 2.6e-42 CL0016