Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1881 ATGCCTGCTTTAACAGAGGCCGAACACATAAAATCGAGAAGGCCCAACAGCCAATTCAGCCATCCCATTTCAGAAACAGATTCAAACCCCCAAATTCCTTCCATTATCCAATCCACTCGCTGCAAATCCACCATTTCCTCTCTCCTCCTCTCCACTTTCTCTAACAACAATTCTAGTCAAACCGTACAGGCCAACATCAACGCCAGTTGCCATAACAAGAAGAAGAACAATTTCTCGGCAGCAACGTTTAAAGGATTAGGATGCGCTGCTGGTGCGTCGCAGCAGGTGTCGGTTCCGGCGGTGATTCGGACATCGGCTGATTGGCACGGAACGAGAGCCAGAAAAAAGAACAGAAGAAATGGTACGAAGAACAGTAACGGCCACAAGACCCGTCAAGGCGTTTTTTATGGTTTTAATTCTGGTCCCGCTACTTGTGTTGATATTCAAGATGTTTGGTGTGGCCCTGGAATCGGGTTTTCAGCTGATGCTGCTGCCTCGGTCGATTGCGTTGTGACAAGGAAGAATGTGTCTGCAAGAGGGAAGATTGCTGTGGAGAAAATAATCCACAGGGAGCGTCGGCGAACTGTAAACCCAGAAAACATCTCGTTTTTGAATAGCGATCCTGATGTTTTCGTAAGTCCCTCCGCTTCAGAGTCTCGTGGAACCGCTAAATACTATCGCCATGTTCGACTTCCTTCCTCTGAAGGTTTTGCTGAGATAACGATGCTTCAAGGAAGTCGACTAATGGGGGGAAGATTAAATTCTCACGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTTGGTGAGAGAATCGGTTATGTGAGCACTGGACTTAAAGAAGATGAGATAGGACGGTGGATAAGGAAATTTAAGCTTCCTAAGATAAATGATACATCAAAGTATAAAGTTGAAAGGAACTGCAGCATTTGTCAGGAAGAGTATGAAACTGATGATGAGGTGGGGAGGCTAAATTGTGAACACAGCTTTCACTTTCAGTGTATACGTGAATGGCTTGCTCAGAAAAACTGCTGCCCAGTCTGTAAGCAGGAAGTTGTGGTTCGTCACCCAGTTCCACAATCCTGA 1113 0.4546 MPALTEAEHIKSRRPNSQFSHPISETDSNPQIPSIIQSTRCKSTISSLLLSTFSNNNSSQTVQANINASCHNKKKNNFSAATFKGLGCAAGASQQVSVPAVIRTSADWHGTRARKKNRRNGTKNSNGHKTRQGVFYGFNSGPATCVDIQDVWCGPGIGFSADAAASVDCVVTRKNVSARGKIAVEKIIHRERRRTVNPENISFLNSDPDVFVSPSASESRGTAKYYRHVRLPSSEGFAEITMLQGSRLMGGRLNSHDQFRDWRLDVDNMSYEQLLELGERIGYVSTGLKEDEIGRWIRKFKLPKINDTSKYKVERNCSICQEEYETDDEVGRLNCEHSFHFQCIREWLAQKNCCPVCKQEVVVRHPVPQS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1881 370 SMART ring_2 317 357 IPR001841 -
Glsi13g1881 370 Pfam Ring finger domain 316 358 IPR001841 -
Glsi13g1881 370 SUPERFAMILY RING/U-box 316 364 - -
Glsi13g1881 370 ProSiteProfiles Zinc finger RING-type profile. 317 358 IPR001841 -
Glsi13g1881 370 MobiDBLite consensus disorder prediction 108 130 - -
Glsi13g1881 370 MobiDBLite consensus disorder prediction 1 32 - -
Glsi13g1881 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 17 361 IPR045191 GO:0061630
Glsi13g1881 370 MobiDBLite consensus disorder prediction 16 32 - -
Glsi13g1881 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 365 IPR013083 -
Glsi13g1881 370 FunFam E3 ubiquitin-protein ligase rnf12-A 284 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1881 Glsi-ChrGlsi13 34558000 34560977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1881 7 272 C3H Transcription Factor Family AT1G73760 37.979 1.79e-46 158