Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1871 ATGAAGAAGATAAGATGCTCACATGGTTGGAAGGTTAACTTGAGAGGAAACTGTAGAAGTGCTAAAAATATGGCAAATAAGATAAGAAAGATAGCAGAAGAGGATCTTACTGCCCTAGCTGTCATCGAGAAACAAAACTTTGATAGTTATTGTTGTGAATTAACTATAGTGCAATCAGCACGAAAAGTAAAAAAGAAAATGTCAGACCTTGATCCGTCCAAGAAAGTGGCCGATAGATATCTCAAGCGTGAAGTCCTTGGTGAAGGTACCTATGGAGTCGTATACAAAGCCATTGACACCCAGACAGGACAGACAGTTGCAATTAAGAAAATTAGACTTGGCAAGCAAAAGGAAGGGGTAAATTTTACTGCTCTCAGGGAGATCAAATTACTTAAAGAGCTCAAAGATCCAAACATTATTGAGTTAATTGATGCATTCCCACATAAAGGCAATTTGCATCTTGTGTTTGAATTCATGGAGACAGACCTCGAAGCTGTTATACGAGACCGAAATATTTTTCTTTCACCAGCTGACATCAAATCATATCTTCAAATGACGCTAAAAGGACTTGATTTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAACAACTTGTTAATAGGATCTAATGGGCAGCTAAAACTTGCAGATTTTGGTTTAGCTCGAATCTTTGGGAGCCCAGATCGAAGATTTACTCATCAGGTGTTTGCTCGGTGGTATAGAGCGCCAGAACTACTATTTGGTACCAAGCAATATGGTTCAGGTGTCGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGACCCTTTTTGCAGGGTTCAAGTGACATTGATCAATTAGGTAAGATTTTTGCAGCATTTGGGACTCCAACACCTTCTCAGTGGCCTGATATGGTATACCTTCCTGATTATGTTGAATACCAAAATGTTCCTGCCCCCCCTTTGCGTTCTTTATTTCCAATAGCAAGTGATGATGCTTTAGATCTGTTGTCAAAGATGTTTACTTACGATCCAAAAACTAGAATTTCAGTGCATCAAGCACTAGAGCACAGGTATTTTTCTTCTGCGCCTCTGCCCACAGAACCATATAAACTTCCTAGACCTGCGCCTAAGAAGGAATCTAGGGTTTCTGATTCAAATCCGCATGAAGGTCCTACTGTATTATCACCACCAAGAAAGTCCAGGAGAGTGATGCCAGGACGTGATGGGTTTGAAGGAAATTCATTGCAAGGGGATAAGATTGATGACAATGTTGGTGACTTCAGGCAGACTGTTGGTGATCATACGGGAAAGAATGAACCAGCACCAATGTCGATAGATTTTTCTATCTTTGGATTAAAACCTCCGAATAGACCTACAATTAACAGTGCTGACAGATCACATTTAAAGAGAAAATTAGATCTAGAATTCCAGCAGCCAGAATGA 1446 0.4011 MKKIRCSHGWKVNLRGNCRSAKNMANKIRKIAEEDLTALAVIEKQNFDSYCCELTIVQSARKVKKKMSDLDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLDFCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWPDMVYLPDYVEYQNVPAPPLRSLFPIASDDALDLLSKMFTYDPKTRISVHQALEHRYFSSAPLPTEPYKLPRPAPKKESRVSDSNPHEGPTVLSPPRKSRRVMPGRDGFEGNSLQGDKIDDNVGDFRQTVGDHTGKNEPAPMSIDFSIFGLKPPNRPTINSADRSHLKRKLDLEFQQPE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1871 481 SMART serkin_6 80 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1871 481 Pfam Protein kinase domain 82 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1871 481 SUPERFAMILY Protein kinase-like (PK-like) 76 367 IPR011009 -
Glsi13g1871 481 Gene3D Phosphorylase Kinase; domain 1 71 160 - -
Glsi13g1871 481 CDD STKc_CDK7 79 373 IPR037770 GO:0005675|GO:0008353|GO:0070985
Glsi13g1871 481 MobiDBLite consensus disorder prediction 366 481 - -
Glsi13g1871 481 Gene3D Transferase(Phosphotransferase) domain 1 161 376 - -
Glsi13g1871 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Glsi13g1871 481 ProSitePatterns Protein kinases ATP-binding region signature. 86 110 IPR017441 GO:0005524
Glsi13g1871 481 MobiDBLite consensus disorder prediction 464 481 - -
Glsi13g1871 481 FunFam Putative cyclin-dependent kinase 7 161 376 - -
Glsi13g1871 481 PANTHER CELL DIVISION PROTEIN KINASE 78 366 - -
Glsi13g1871 481 FunFam Cyclin-dependent kinase D-1 71 160 - -
Glsi13g1871 481 ProSiteProfiles Protein kinase domain profile. 80 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1871 Glsi-ChrGlsi13 34453933 34465905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1871 74 478 Core Cell Cycle Gene Families AT1G18040 75.556 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Glsi13g1871 Pkinase 9e-72 CL0016